Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   I33_RS17095 Genome accession   NC_017195
Coordinates   3441085..3442476 (-) Length   463 a.a.
NCBI ID   WP_014478131.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3436085..3447476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS17060 (I33_3669) flgL 3436257..3437153 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  I33_RS17065 (I33_3670) flgK 3437164..3438687 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  I33_RS17070 (I33_3671) flgN 3438706..3439188 (-) 483 WP_014478127.1 flagellar protein FlgN -
  I33_RS17075 (I33_3672) flgM 3439204..3439470 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  I33_RS17080 (I33_3673) yvyF 3439551..3439970 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  I33_RS17085 (I33_3674) comFC 3440043..3440765 (-) 723 WP_014478129.1 comF operon protein ComFC Machinery gene
  I33_RS17090 (I33_3675) comFB 3440729..3441025 (-) 297 WP_014478130.1 late competence protein ComFB -
  I33_RS17095 (I33_3676) comFA 3441085..3442476 (-) 1392 WP_014478131.1 ATP-dependent helicase ComFA Machinery gene
  I33_RS17100 (I33_3677) fakBA 3442582..3443427 (-) 846 WP_014478132.1 DegV family protein -
  I33_RS17105 (I33_3678) degU 3443525..3444214 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I33_RS17110 (I33_3679) degS 3444297..3445454 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  I33_RS17115 (I33_3680) yvyE 3445671..3446324 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52652.71 Da        Isoelectric Point: 9.8875

>NTDB_id=45441 I33_RS17095 WP_014478131.1 3441085..3442476(-) (comFA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGFRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ELALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYRGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=45441 I33_RS17095 WP_014478131.1 3441085..3442476(-) (comFA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATTTAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGAAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATTAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACAGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.408

100

0.974

Multiple sequence alignment