Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   I2453_RS03840 Genome accession   NZ_CP066242
Coordinates   712312..714285 (-) Length   657 a.a.
NCBI ID   WP_011049758.1    Uniprot ID   Q5HVA1
Organism   Campylobacter jejuni strain RM1221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 707312..719285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2453_RS09440 - 707342..707830 (+) 489 WP_250482766.1 potassium-transporting ATPase subunit KdpA -
  I2453_RS03825 kdpB 707840..709900 (+) 2061 Protein_751 potassium-transporting ATPase subunit KdpB -
  I2453_RS03830 kdpC 709902..710510 (+) 609 WP_002935104.1 potassium-transporting ATPase subunit KdpC -
  I2453_RS09445 - 710641..711534 (+) 894 WP_250482767.1 hypothetical protein -
  I2453_RS09450 - 711558..712181 (+) 624 WP_250489919.1 DUF4118 domain-containing protein -
  I2453_RS03840 uvrB 712312..714285 (-) 1974 WP_011049758.1 excinuclease ABC subunit UvrB Machinery gene
  I2453_RS03845 - 714439..714669 (+) 231 WP_002852327.1 hypothetical protein -
  I2453_RS03850 - 714659..714901 (+) 243 WP_002854947.1 hypothetical protein -
  I2453_RS03855 Cj0683 714898..715335 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  I2453_RS03860 priA 715317..717170 (+) 1854 WP_002867637.1 primosomal protein N' -
  I2453_RS03865 cipA 717180..718576 (-) 1397 Protein_760 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75906.46 Da        Isoelectric Point: 7.0157

>NTDB_id=454386 I2453_RS03840 WP_011049758.1 712312..714285(-) (uvrB) [Campylobacter jejuni strain RM1221]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLAKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=454386 I2453_RS03840 WP_011049758.1 712312..714285(-) (uvrB) [Campylobacter jejuni strain RM1221]
ATGTTAGAACTTACCAGCGAATTTAAACCTAGTCCTGATCAACAAGAAGCCATAAAAGGTATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGCGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAATAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATTCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCCACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGCGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGAAAATTTCTTGTCATAGTCGATGAAAGCCATGTATCTTTACCGCAATT
TAGAGGTATGTTTGCAGGAGATAGAAGTAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAACATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACTGTAC
TGACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACCACAAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCTAAACTTGCCAAAGAGTTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-246)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB/uvrC motif (UVR)

(623-656)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HVA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae D39

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae TIGR4

50.772

98.63

0.501