Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I33_RS07580 Genome accession   NC_017195
Coordinates   1492267..1492545 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487267..1497545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS07565 (I33_1622) panEB 1488455..1489366 (+) 912 WP_014476689.1 ketopantoate reductase family protein -
  I33_RS07570 (I33_1623) ampS 1489400..1490632 (-) 1233 WP_014476690.1 aminopeptidase -
  I33_RS20240 (I33_1624) ykpC 1490742..1490876 (-) 135 WP_003238865.1 protein YkpC -
  I33_RS07575 (I33_1625) mreBH 1490977..1491984 (-) 1008 WP_014476691.1 cell shape-determining protein MreBH -
  I33_RS07580 (I33_1626) abrB 1492267..1492545 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  I33_RS07585 (I33_1627) kinC 1492735..1494021 (+) 1287 WP_014476692.1 two-component sensor histidine kinase KinC -
  I33_RS07590 (I33_1628) ykqA 1494037..1494864 (+) 828 WP_014476693.1 gamma-glutamylcyclotransferase -
  I33_RS07595 (I33_1629) ktrC 1494927..1495592 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  I33_RS07600 (I33_1630) ade 1495748..1497481 (+) 1734 WP_014476694.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=45405 I33_RS07580 WP_003244728.1 1492267..1492545(+) (abrB) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=45405 I33_RS07580 WP_003244728.1 1492267..1492545(+) (abrB) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGTAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment