Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I33_RS10690 Genome accession   NC_017195
Coordinates   2185897..2186517 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180897..2191517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS10650 (I33_2283) ptsA 2182029..2182535 (-) 507 WP_014477157.1 PTS glucose transporter subunit IIA -
  I33_RS10655 (I33_2284) ypqA 2182673..2183092 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  I33_RS10660 (I33_2285) sppG 2183113..2183490 (-) 378 WP_014477159.1 YppG family protein -
  I33_RS10665 (I33_2286) yppF 2183678..2183866 (+) 189 WP_003230690.1 YppF family protein -
  I33_RS10670 (I33_2287) yppE 2183905..2184276 (-) 372 WP_003246080.1 YppE family protein -
  I33_RS10675 (I33_2288) yppD 2184321..2184566 (-) 246 WP_004398488.1 YppD family protein -
  I33_RS10680 (I33_2289) sspM 2184765..2184869 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  I33_RS10685 (I33_2290) yppC 2184894..2185856 (-) 963 WP_014477160.1 DUF2515 domain-containing protein -
  I33_RS10690 (I33_2291) recU 2185897..2186517 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  I33_RS10695 (I33_2292) ponA 2186539..2189298 (+) 2760 WP_014477161.1 PBP1A family penicillin-binding protein -
  I33_RS10700 (I33_2293) ypoC 2189374..2189868 (-) 495 WP_014477162.1 YpoC family protein -
  I33_RS10705 (I33_2294) nth 2189865..2190524 (-) 660 WP_009967580.1 endonuclease III -
  I33_RS10710 (I33_2295) dnaD 2190543..2191241 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=45410 I33_RS10690 WP_004399067.1 2185897..2186517(+) (recU) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=45410 I33_RS10690 WP_004399067.1 2185897..2186517(+) (recU) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCTACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment