Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HUO05_RS02150 Genome accession   NZ_CP054700
Coordinates   453322..455577 (+) Length   751 a.a.
NCBI ID   WP_176310865.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448322..460577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS02125 (HUO05_02125) - 448681..449250 (-) 570 WP_017634743.1 hypothetical protein -
  HUO05_RS02130 (HUO05_02130) lolC 449500..450708 (+) 1209 WP_031778997.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  HUO05_RS02135 (HUO05_02135) lolD 450701..451408 (+) 708 WP_104975985.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HUO05_RS02140 (HUO05_02140) lolE 451411..452655 (+) 1245 WP_176310864.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  HUO05_RS02145 (HUO05_02145) - 452804..453313 (-) 510 WP_005387834.1 DUF2062 domain-containing protein -
  HUO05_RS02150 (HUO05_02150) comEC 453322..455577 (+) 2256 WP_176310865.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUO05_RS02155 (HUO05_02155) msbA 455609..457357 (+) 1749 WP_042522131.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HUO05_RS02160 (HUO05_02160) lpxK 457363..458370 (+) 1008 WP_054729263.1 tetraacyldisaccharide 4'-kinase -
  HUO05_RS02165 (HUO05_02165) - 458351..458530 (+) 180 WP_005378451.1 Trm112 family protein -
  HUO05_RS02170 (HUO05_02170) kdsB 458530..459285 (+) 756 WP_005378450.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84372.35 Da        Isoelectric Point: 8.3254

>NTDB_id=454006 HUO05_RS02150 WP_176310865.1 453322..455577(+) (comEC) [Vibrio alginolyticus strain GS_MYPK1]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLLAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAIGSWQPISMEMTMLVMAIVVCLIFQRFMSQYAWYLLL
GIVISIKFAAEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGVTWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=454006 HUO05_RS02150 WP_176310865.1 453322..455577(+) (comEC) [Vibrio alginolyticus strain GS_MYPK1]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCTATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGATGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTGCCTAGCTT
ATATGGGCTGATCTTTGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCATACCTATCCGTTTGTGCGGTATTGCTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGAGGTTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTCAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCCTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAATAGGTTCTTGGCAACCTATTAGCATGGAAA
TGACAATGCTGGTTATGGCTATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGTTTGCAGCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATCGAGGCGGTGAGCCCGAGTGTGGCGGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGCTTGGCGTTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.415

100

0.695
  comEC Vibrio campbellii strain DS40M4

65.957

100

0.66
  comEC Vibrio cholerae strain A1552

43.899

100

0.441