Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JDY60_RS06510 Genome accession   NZ_CP066172
Coordinates   1364640..1365272 (-) Length   210 a.a.
NCBI ID   WP_200370412.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359640..1370272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06495 (JDY60_06495) recD/recD2/recDB 1360192..1362561 (+) 2370 WP_200370411.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JDY60_RS06500 (JDY60_06500) tig 1362609..1363892 (-) 1284 WP_000116504.1 trigger factor -
  JDY60_RS06505 (JDY60_06505) - 1363983..1364639 (-) 657 WP_084922096.1 DNA alkylation repair protein -
  JDY60_RS06510 (JDY60_06510) vraR 1364640..1365272 (-) 633 WP_200370412.1 response regulator transcription factor Regulator
  JDY60_RS06515 (JDY60_06515) - 1365283..1366281 (-) 999 WP_000744925.1 sensor histidine kinase -
  JDY60_RS06520 (JDY60_06520) liaF 1366278..1366976 (-) 699 WP_000714479.1 cell wall-active antibiotics response protein LiaF -
  JDY60_RS06525 (JDY60_06525) fni 1367093..1368094 (-) 1002 WP_200370413.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  JDY60_RS06530 (JDY60_06530) - 1368078..1369085 (-) 1008 WP_200370414.1 phosphomevalonate kinase -
  JDY60_RS06535 (JDY60_06535) mvaD 1369072..1370025 (-) 954 WP_200370415.1 diphosphomevalonate decarboxylase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23601.21 Da        Isoelectric Point: 4.8943

>NTDB_id=453972 JDY60_RS06510 WP_200370412.1 1364640..1365272(-) (vraR) [Streptococcus oralis strain SF100]
MKILLVDDHEMVRLGLKSYFNLQDDVEVVGEAANGAQGIELALELRPDVIVMDIVMPEMNGIDATLAILKEWPEAKILIV
TSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY
ENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLVGQENF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=453972 JDY60_RS06510 WP_200370412.1 1364640..1365272(-) (vraR) [Streptococcus oralis strain SF100]
ATGAAAATTTTACTGGTAGATGACCATGAAATGGTCCGATTGGGCTTGAAAAGCTATTTTAATCTCCAAGACGATGTGGA
AGTTGTGGGCGAGGCTGCCAATGGGGCTCAAGGTATTGAGTTGGCCTTGGAACTGCGTCCAGATGTCATTGTCATGGATA
TTGTCATGCCTGAGATGAATGGAATTGATGCTACCTTGGCCATCCTCAAAGAATGGCCTGAAGCCAAGATTTTGATTGTG
ACCTCTTACCTAGACAATGAAAAAATCATGCCGGTCTTGAACGCGGGTGCCAAAGGTTATATGCTCAAGACTTCTAGTGC
AGACGAACTGCTTCATGCCGTCCGCAAGGTGGCTGCTGGAGAGCTTGCTATTGAACAAGAGGTCAGCAAGAAGGTCGAAT
ACCACCGTAATCATATGGAGCTTCATGAGGAGCTGACTGCGCGTGAGCGAGACGTGCTCCAACTCATCGCTAAGGGCTAC
GAAAATCAACGCATTGCAGATGAACTCTTCATCTCTCTCAAGACGGTCAAGACCCACGTGTCCAACATCCTAGCCAAGCT
TGAGGTCAGTGATCGCACCCAGGCTGCGGTCTATGCCTTTCAGCACCACTTGGTTGGGCAGGAGAACTTTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-115)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.632

99.524

0.524
  degU Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.405