Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   JDY60_RS06495 Genome accession   NZ_CP066172
Coordinates   1360192..1362561 (+) Length   789 a.a.
NCBI ID   WP_200370411.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355192..1367561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06470 (JDY60_06470) mutS/mutS2 1355192..1357528 (-) 2337 WP_200370407.1 endonuclease MutS2 Machinery gene
  JDY60_RS06475 (JDY60_06475) - 1357629..1358177 (-) 549 WP_000623537.1 CvpA family protein -
  JDY60_RS06480 (JDY60_06480) zapA 1358174..1358476 (-) 303 WP_000002028.1 cell division protein ZapA -
  JDY60_RS06485 (JDY60_06485) rnhC 1358563..1359444 (+) 882 WP_200370410.1 ribonuclease HIII -
  JDY60_RS06490 (JDY60_06490) lepB 1359448..1360062 (+) 615 WP_001083994.1 signal peptidase I -
  JDY60_RS06495 (JDY60_06495) recD/recD2/recDB 1360192..1362561 (+) 2370 WP_200370411.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JDY60_RS06500 (JDY60_06500) tig 1362609..1363892 (-) 1284 WP_000116504.1 trigger factor -
  JDY60_RS06505 (JDY60_06505) - 1363983..1364639 (-) 657 WP_084922096.1 DNA alkylation repair protein -
  JDY60_RS06510 (JDY60_06510) vraR 1364640..1365272 (-) 633 WP_200370412.1 response regulator transcription factor Regulator
  JDY60_RS06515 (JDY60_06515) - 1365283..1366281 (-) 999 WP_000744925.1 sensor histidine kinase -
  JDY60_RS06520 (JDY60_06520) liaF 1366278..1366976 (-) 699 WP_000714479.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88612.56 Da        Isoelectric Point: 4.6194

>NTDB_id=453971 JDY60_RS06495 WP_200370411.1 1360192..1362561(+) (recD/recD2/recDB) [Streptococcus oralis strain SF100]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTRKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLESIAGLSAKNREAFLSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDIVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKEKQKNQDLETIHKH
ISTVEQELGIQYDTIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIKKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCHYRIGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIETNIEESKQAFSETATPSDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=453971 JDY60_RS06495 WP_200370411.1 1360192..1362561(+) (recD/recD2/recDB) [Streptococcus oralis strain SF100]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGGATTATTTTTGAAAATCCCAGTAATTTTTATCGCATTCTCCTCCTAGA
TATCGAAGATACCAATGCCGAGGACTTTGACGATTTTGAAATCATCGTCACCGGAACCATGGCGGACGTGATTGAAGGGG
AAGATTACACTTTTTGGGGACAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTTCAGATTAGCCGTTATGAACGGGCA
AAACCAACCAGAAAAGGGCTAGTCAAATACTTTTCTAGCAGTCATTTCAAGGGAATTGGACTCAAAACTGCCCAGAAAAT
CGTTGATAGCTACGGTGACAATACCATAGACGAAATTCTGGAGCATCCTGAAAAGCTGGAAAGCATTGCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTCCTCTCTACCCTCCGTCTCAACTATGGAACCGAGATGGTCTTGGCAAAACTAGCTAACTAC
GGCATTCCCAATAAACTGGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACGCTGGATATTGTCGAGAACTATCCCTA
CCAGCTGGTCGAGGATATCAAAGGATTAGGTTTTACCATTGCTGACCAATTGGCTGCCGAACTAGGTATCGAAAGCCAAG
CTCCTGAACGCTTCCGTGCTGGCCTTGTTCATAGTCTTTTTCAGGGATGTATGGATACGGGCGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAAACCCTTACTCTTCTCGAATCTTCCCGTCCCGTGGAACTCGATCCCAGCCAAGTAGCTCAGGA
ATTGTCTCATCTGATTGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATTTTTGATAACAGCCTCTTTTTTGCTGAGG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGAAAAGCAGAAAAATCAGGATTTGGAAACCATTCACAAGCAT
ATCTCTACTGTCGAGCAAGAACTGGGGATTCAGTACGATACCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACAGGTAAGACGACTGTTATCAATGGAATTATCGCTGTTTATGCCCTTTTAG
AAGGGCTTGATCTCAGGAAGAAAAGCAACTTACCTATCCTTCTTGCTGCTCCAACTGGTCGAGCGGCTCGGCGCATGAAT
GAATTGACGGGTTTGCCTAGCGCGACCATACACCGTCATTTGGGGATGACGGGAGACGATGATACCAGCCATCTAGAAGA
TTATCTGGATGCCGACTTTATCATTGTAGATGAGTTTTCCATGGTGGATACTTGGCTAGCCAACCAACTTTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTGGGGGATAGCGATCAGCTACCTTCTGTTAGTCCTGGACAAGTCCTAGCTGAC
CTGCTCCAGATACCTCTGATTCCGCAGACCCGCTTGGAACGGATTTACCGTCAGAGTGAAGAATCAACTATCGTCACCTT
AGCTAGTCAGATTCGACAGGGAATCTTGCCAGCCGACTTTACCCAGAAAAAAGCTGACCGCTCCTACTTTGAAATCGCTA
GTGGCCATATCCCAGCTACCATTAAGAAAATTCTTGGCGCTGCTCTCAGAAGTGGCATTCCAGCTCGAGATATTCAGGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTGAGCTTTGAAGCAACTCAGTGTCACTATCGAATAGGGGACAAGGTCATTCACCTAGTCAACGATGCCGAAG
TCAATGTCTTTAACGGAGACCTAGGTTACATCACAGACCTGATTCCTGGTAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGAAATGAAGTCGTCTACCCACGTAATGAATGGTACAAGATTCGACTAGCCTACGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTTCCTGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAGCGAAATC
TCATCTACACAGCTATCACACGGGCCAAGAGCAAGCTCATCCTTCTCGGTGAATTACAGGCCTTTGACTATGCAGTCAAG
CATATCGGGACTGCTCGCAAGACCTATCTGATTGAGCGTTTCAGTGATTTAATTGAAACTAATATTGAAGAAAGTAAACA
GGCCTTCTCTGAAACTGCCACACCAAGTGACTCTGAACAATCCTACATCCTCACCGAAGAAAACTGGTCTAGTATTCCAG
CCATGATTGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.021

95.311

0.401