Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HUB98_RS03790 Genome accession   NZ_CP054614
Coordinates   893986..894435 (-) Length   149 a.a.
NCBI ID   WP_110896810.1    Uniprot ID   -
Organism   Paenibacillus barcinonensis strain KACC11450     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 888986..899435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUB98_RS03755 (HUB98_03755) - 889617..890144 (-) 528 WP_167433690.1 SMI1/KNR4 family protein -
  HUB98_RS03760 (HUB98_03760) - 890164..891165 (-) 1002 WP_110896805.1 hypothetical protein -
  HUB98_RS03765 (HUB98_03765) - 891419..891556 (-) 138 WP_167433691.1 hypothetical protein -
  HUB98_RS03770 (HUB98_03770) radC 891556..892044 (-) 489 WP_110896806.1 DNA repair protein RadC -
  HUB98_RS03775 (HUB98_03775) - 892153..892512 (-) 360 WP_244213810.1 hypothetical protein -
  HUB98_RS03780 (HUB98_03780) - 892849..893526 (-) 678 WP_110896808.1 PD-(D/E)XK nuclease family protein -
  HUB98_RS03785 (HUB98_03785) - 893523..893948 (-) 426 WP_110896809.1 hypothetical protein -
  HUB98_RS03790 (HUB98_03790) ssbA 893986..894435 (-) 450 WP_110896810.1 single-stranded DNA-binding protein Machinery gene
  HUB98_RS29255 - 894438..894716 (-) 279 WP_244964915.1 hypothetical protein -
  HUB98_RS03800 (HUB98_03800) - 895105..895437 (-) 333 WP_244213812.1 hypothetical protein -
  HUB98_RS03805 (HUB98_03805) - 895434..896345 (-) 912 WP_110896812.1 hypothetical protein -
  HUB98_RS03810 (HUB98_03810) - 896360..896539 (-) 180 WP_167433692.1 hypothetical protein -
  HUB98_RS03815 (HUB98_03815) - 896647..896982 (-) 336 WP_110896814.1 hypothetical protein -
  HUB98_RS03820 (HUB98_03820) - 896975..897457 (-) 483 WP_110896815.1 hypothetical protein -
  HUB98_RS03825 (HUB98_03825) - 897869..898573 (-) 705 WP_110896816.1 hypothetical protein -
  HUB98_RS03830 (HUB98_03830) - 898588..899406 (-) 819 WP_244213813.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16401.19 Da        Isoelectric Point: 7.1672

>NTDB_id=453809 HUB98_RS03790 WP_110896810.1 893986..894435(-) (ssbA) [Paenibacillus barcinonensis strain KACC11450]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPIVTWRQLAEACANHLKKGHMAAVEGRIQVR
NYENNEGKRVYVTEIIADNVRFLTPQSGGSNSNDSRLGTGNQQNRNNGNGRGTNTAGDAWGISDDDLPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=453809 HUB98_RS03790 WP_110896810.1 893986..894435(-) (ssbA) [Paenibacillus barcinonensis strain KACC11450]
ATGCTGAATCGTGTAATTTTGATTGGTCGTCTGACTCGTGATCCTGAGTTACGATATACACCCGCAGGAGTAGCCGTGAC
ACAATTTACTTTGGCAGTAGATAGACCTTTTACAAGCCAAGGTGGCGAACGAGAAGCGGATTTCATTCCTATTGTTACTT
GGAGACAACTTGCTGAGGCTTGTGCAAACCATTTGAAAAAAGGGCATATGGCTGCAGTCGAAGGTCGAATTCAAGTACGA
AACTATGAAAATAATGAAGGTAAACGTGTATACGTAACTGAAATCATTGCCGACAACGTTAGATTCCTCACTCCTCAGTC
TGGTGGTTCTAATTCAAACGATTCAAGACTGGGGACAGGAAATCAACAGAATCGAAACAATGGAAACGGTCGTGGAACGA
ATACGGCAGGCGATGCATGGGGAATATCTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.757

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

46.471

100

0.53
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

71.141

0.389