Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HT135_RS13335 Genome accession   NZ_CP054584
Coordinates   2604567..2604902 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain KKD1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2599567..2609902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS13315 (HT135_13310) gcvT 2600157..2601245 (-) 1089 WP_106020089.1 glycine cleavage system aminomethyltransferase GcvT -
  HT135_RS13320 (HT135_13315) - 2601689..2603362 (+) 1674 WP_106020342.1 DEAD/DEAH box helicase -
  HT135_RS13325 (HT135_13320) - 2603382..2604176 (+) 795 WP_106020090.1 YqhG family protein -
  HT135_RS13330 (HT135_13325) sinI 2604360..2604533 (+) 174 WP_024122036.1 anti-repressor SinI Regulator
  HT135_RS13335 (HT135_13330) sinR 2604567..2604902 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  HT135_RS13340 (HT135_13335) tasA 2604989..2605774 (-) 786 WP_106020091.1 biofilm matrix protein TasA -
  HT135_RS13345 (HT135_13340) sipW 2605839..2606423 (-) 585 WP_106020092.1 signal peptidase I SipW -
  HT135_RS13350 (HT135_13345) tapA 2606395..2607156 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  HT135_RS13355 (HT135_13350) - 2607433..2607756 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  HT135_RS13360 (HT135_13355) - 2607799..2607978 (-) 180 WP_003236949.1 YqzE family protein -
  HT135_RS13365 (HT135_13360) comGG 2608046..2608420 (-) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  HT135_RS13370 (HT135_13365) comGF 2608421..2608804 (-) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  HT135_RS13375 (HT135_13370) comGE 2608830..2609177 (-) 348 WP_106020095.1 competence type IV pilus minor pilin ComGE Machinery gene
  HT135_RS13380 (HT135_13375) comGD 2609161..2609592 (-) 432 WP_103672268.1 competence type IV pilus minor pilin ComGD Machinery gene
  HT135_RS13385 (HT135_13380) comGC 2609582..2609878 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=453717 HT135_RS13335 WP_003226345.1 2604567..2604902(+) (sinR) [Bacillus halotolerans strain KKD1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=453717 HT135_RS13335 WP_003226345.1 2604567..2604902(+) (sinR) [Bacillus halotolerans strain KKD1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1