Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FOC67_RS02450 Genome accession   NZ_CP054572
Coordinates   507886..508758 (-) Length   290 a.a.
NCBI ID   WP_009315897.1    Uniprot ID   A0A6N0KF31
Organism   Pseudomonas sp. FDAARGOS_761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502886..513758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC67_RS02405 (FOC67_02405) - 503747..503917 (-) 171 WP_003094672.1 DUF3094 family protein -
  FOC67_RS02410 (FOC67_02410) - 503943..504392 (-) 450 WP_003094670.1 MOSC domain-containing protein -
  FOC67_RS02415 (FOC67_02415) - 504389..505018 (-) 630 WP_003094668.1 DUF1780 domain-containing protein -
  FOC67_RS02420 (FOC67_02420) - 505151..505576 (+) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  FOC67_RS02425 (FOC67_02425) - 505573..506043 (+) 471 WP_003094664.1 hypothetical protein -
  FOC67_RS02430 (FOC67_02430) - 506040..506729 (+) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  FOC67_RS02435 (FOC67_02435) - 506835..507044 (+) 210 WP_003094660.1 hypothetical protein -
  FOC67_RS02440 (FOC67_02440) yacG 507081..507281 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  FOC67_RS02445 (FOC67_02445) coaE 507278..507889 (-) 612 WP_003094654.1 dephospho-CoA kinase -
  FOC67_RS02450 (FOC67_02450) pilD 507886..508758 (-) 873 WP_009315897.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  FOC67_RS02455 (FOC67_02455) pilC 508762..509982 (-) 1221 WP_009315898.1 type 4a pilus biogenesis protein PilC Machinery gene
  FOC67_RS02460 (FOC67_02460) pilB 509986..511686 (-) 1701 WP_003112841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOC67_RS02465 (FOC67_02465) pilA 511918..512367 (+) 450 WP_031627735.1 type 4a pilus biogenesis protein PilA Machinery gene
  FOC67_RS02475 (FOC67_02475) nadC 512579..513427 (-) 849 WP_009315899.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31823.84 Da        Isoelectric Point: 7.3860

>NTDB_id=453555 FOC67_RS02450 WP_009315897.1 507886..508758(-) (pilD) [Pseudomonas sp. FDAARGOS_761]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEARETLGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=453555 FOC67_RS02450 WP_009315897.1 507886..508758(-) (pilD) [Pseudomonas sp. FDAARGOS_761]
ATGCCCCTTCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAACGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCATGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KF31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.071

96.552

0.541
  pilD Vibrio campbellii strain DS40M4

53.004

97.586

0.517
  pilD Acinetobacter nosocomialis M2

50.53

97.586

0.493
  pilD Acinetobacter baumannii D1279779

50.53

97.586

0.493
  pilD Neisseria gonorrhoeae MS11

49.281

95.862

0.472