Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6H78_RS07125 Genome accession   NZ_CP066059
Coordinates   1479076..1480125 (+) Length   349 a.a.
NCBI ID   WP_198459239.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1474076..1485125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS07105 (I6H78_07105) dnaJ 1476044..1477180 (+) 1137 WP_001066315.1 molecular chaperone DnaJ -
  I6H78_RS07110 (I6H78_07110) - 1477573..1477860 (-) 288 WP_198459236.1 hypothetical protein -
  I6H78_RS07115 (I6H78_07115) - 1477870..1478280 (-) 411 WP_198459237.1 HIT family protein -
  I6H78_RS07120 (I6H78_07120) pptA 1478348..1479079 (+) 732 WP_198459238.1 ABC transporter ATP-binding protein Regulator
  I6H78_RS07125 (I6H78_07125) pptB 1479076..1480125 (+) 1050 WP_198459239.1 ABC transporter permease Regulator
  I6H78_RS07130 (I6H78_07130) - 1480274..1480603 (-) 330 WP_125418557.1 helicase BlpT -
  I6H78_RS07135 (I6H78_07135) - 1480884..1481222 (+) 339 WP_125418559.1 LytTR family DNA-binding domain-containing protein -
  I6H78_RS07140 (I6H78_07140) comE/blpR 1481227..1481964 (+) 738 WP_198459240.1 response regulator transcription factor Regulator
  I6H78_RS07145 (I6H78_07145) comD/blpH 1481978..1483318 (+) 1341 WP_125418563.1 sensor histidine kinase Regulator
  I6H78_RS07150 (I6H78_07150) blpC 1483598..1483756 (-) 159 WP_125418565.1 quorum-sensing system pheromone BlpC -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40494.56 Da        Isoelectric Point: 10.0984

>NTDB_id=453484 I6H78_RS07125 WP_198459239.1 1479076..1480125(+) (pptB) [Streptococcus oralis strain FDAARGOS_1021]
MKDLFLRRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQHFPENHWPILLFLGIVSALLLAWGGIATYMEG
PDKLFLLVSEEEVKSHLKGQTVRSLVFWLFVQTLFLLLFAPLFLAMGYGFPVFLIYVVLLGAGKYLLFRQKASKFYTETG
LNWDYVIAQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFILKVVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLALIFIEQSWIATAVVVLFNYLMLFQLLALYRAFDYQYLTQLFPLEKGEKEKGLQEVIRGLTGFVLLVQLIVGLITLQE
KLALLALLGAGLVLQILYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=453484 I6H78_RS07125 WP_198459239.1 1479076..1480125(+) (pptB) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAAGACTTGTTTTTAAGGAGAAAGCAGGCTTTTCGTAAGGAGTGTGTTGGTTATCTGCGTTATGTTCTCAATGATCA
CTTTGTCTTGTTCCTGCTAGTTCTCATTGGTTTTCTAGCTTACCAGTACAGTCAACTCTTGCAACATTTTCCTGAAAATC
ATTGGCCTATCCTCTTGTTTTTGGGGATTGTATCTGCCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTATATGGAAGGA
CCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAGGAGGTTAAGTCCCACCTCAAAGGACAGACAGTGCGCTCGCTAGTCTT
TTGGCTCTTTGTCCAAACCCTTTTCTTGCTTTTATTTGCGCCCTTGTTTTTAGCCATGGGCTATGGTTTTCCAGTCTTTC
TCATCTATGTTGTTTTATTGGGAGCTGGAAAATATCTCCTCTTTCGCCAAAAAGCCAGTAAATTTTATACTGAGACTGGT
CTCAACTGGGACTATGTGATTGCCCAAGAAAGCAAACGCAAGCAAGTTTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCAAATAGTGTCAAACGTCGCGCTTATCTAGATTTCATCCTTAAAGTAGTTCAGAAAGTGCCTGGGAAGA
TCTGGCAAAATCTCTATCTTCGTTCTTATCTGCGAAATGGAGACCTCTTTGCCCTCAGTCTCCGTCTCTTGCTCCTATCC
TTGTTAGCTTTGATCTTTATCGAGCAGTCTTGGATTGCGACGGCAGTGGTTGTCCTGTTTAATTACCTTATGCTCTTCCA
GTTGTTGGCTCTCTATCGTGCTTTTGACTACCAGTATTTGACCCAGCTCTTTCCACTAGAAAAAGGGGAGAAAGAGAAGG
GACTACAGGAAGTTATCCGAGGATTGACAGGTTTTGTTTTATTGGTTCAGCTGATAGTTGGTTTGATTACCCTCCAAGAA
AAACTAGCTCTTCTAGCCCTGCTTGGAGCTGGACTGGTCCTGCAAATCTTGTATCTCCCTTATCAGGTGAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.839

99.713

0.467