Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FOC72_RS01060 Genome accession   NZ_CP054570
Coordinates   218711..219778 (+) Length   355 a.a.
NCBI ID   WP_002893620.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 213711..224778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS01045 (FOC72_01045) - 214240..216215 (+) 1976 Protein_208 peptide ABC transporter substrate-binding protein -
  FOC72_RS01050 (FOC72_01050) amiC 216280..217776 (+) 1497 WP_002893622.1 ABC transporter permease Regulator
  FOC72_RS01055 (FOC72_01055) amiD 217776..218702 (+) 927 WP_002893621.1 oligopeptide ABC transporter permease OppC Regulator
  FOC72_RS01060 (FOC72_01060) amiE 218711..219778 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  FOC72_RS01065 (FOC72_01065) amiF 219789..220715 (+) 927 WP_002893618.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39473.11 Da        Isoelectric Point: 4.6923

>NTDB_id=453478 FOC72_RS01060 WP_002893620.1 218711..219778(+) (amiE) [Streptococcus sanguinis strain FDAARGOS_770]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEEAPAFNVSDTHWAK
TWLLHEDAPKVDKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=453478 FOC72_RS01060 WP_002893620.1 218711..219778(+) (amiE) [Streptococcus sanguinis strain FDAARGOS_770]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGACCGAGTTTTAACAGC
CATTCGTGGAGTCTCTCTGGACTTGATTGAAGGCGAAGTTCTGGCTATTGTTGGTGAATCAGGTTCTGGTAAGTCTGTAT
TGACCAAGACCTTTACTGGAATGCTAGAAGAAAATGGCCGTGTAGCTCAAGGAACCATTGACTACCGTGGCAAAGATTTG
ACAACTCTTCGGAGTAACAAGGATTGGGAGCCGATTCGCGGTGCAAAAATTGCGACTATCTTCCAAGATCCGATGACGAG
CTTGGATCCCATTAATACGATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAGGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGAGCAAGGTCGGGATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCAGGTGGTATGCGTCAGCGGATTGTTATTGCTATTGCCTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCCCTCGATGTAACGATTCAAGCGCAGATTATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACTA
TCTTTATTACGCACGACCTTGGTGTTGTGGCTAGTATTGCAGATAAGGTTGCGGTCATGTATGCCGGTGAAATTGTAGAA
TACGGTACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTATACATGGAGTTTGCTATCCAGCTTGCCTCAGTTGGC
AGATGCGAATGGTGCGCTCTACTCGATTCCTGGTACTCCGCCGTCACTTTATTCACCAATCAAAGGGGATGCCTTTGCTT
TGCGTTCTGACTATGCCATGTCAATTGACTTTGAAGAAGAAGCACCGGCTTTCAATGTGTCAGATACTCATTGGGCTAAG
ACATGGTTGCTGCACGAAGATGCGCCTAAGGTTGATAAACCAGAGATTATCGAAAACCTGCATGAAAAAATTCGTTCAAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

57.018

96.338

0.549