Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FOC72_RS01055 Genome accession   NZ_CP054570
Coordinates   217776..218702 (+) Length   308 a.a.
NCBI ID   WP_002893621.1    Uniprot ID   A3CQ66
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 212776..223702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS01045 (FOC72_01045) - 214240..216215 (+) 1976 Protein_208 peptide ABC transporter substrate-binding protein -
  FOC72_RS01050 (FOC72_01050) amiC 216280..217776 (+) 1497 WP_002893622.1 ABC transporter permease Regulator
  FOC72_RS01055 (FOC72_01055) amiD 217776..218702 (+) 927 WP_002893621.1 oligopeptide ABC transporter permease OppC Regulator
  FOC72_RS01060 (FOC72_01060) amiE 218711..219778 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  FOC72_RS01065 (FOC72_01065) amiF 219789..220715 (+) 927 WP_002893618.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34640.69 Da        Isoelectric Point: 9.8486

>NTDB_id=453477 FOC72_RS01055 WP_002893621.1 217776..218702(+) (amiD) [Streptococcus sanguinis strain FDAARGOS_770]
MATIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTITMLGILIAIILMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPSSQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRVMMEIYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=453477 FOC72_RS01055 WP_002893621.1 217776..218702(+) (amiD) [Streptococcus sanguinis strain FDAARGOS_770]
ATGGCTACAATTGATAAAAGCAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTCATGCGTCAATTTCTGAAAAAGAAATCAACCATTACCATGCTGGGGATTCTGATTGCCATTA
TTCTCATGAGCTTCATTTATCCTATGTTTTCAAACTTCGACTTTAATGACGTGAGCAAGGTAAACGACTTTAGCATGCGT
TACATCAAACCAAGTTCTCAATACTGGTTTGGAACGGATAGTAATGGTAAGTCTCTCTTTGATGGTGTTTGGTTTGGTGC
TCGTAACTCTATTCTTATTTCGATTATTGCGACGGTTATTAATCTGGCCATCGGAGTCATCATCGGCGGTATCTGGGGAA
TTTCCAAAACAGTTGACCGTGTCATGATGGAAATCTACAATATCATTTCAAATATCCCAGCCCTCTTGATTGTCATTGTC
TTGACCTACTCTATCGGTGCTGGTTTCTGGAATCTTATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCCTACAC
TATCCGTGTGCAGATTATGCGCTATCGGGATTTGGAATACAACCTTGCCTCTCGTACCCTTGGTACACCGACTCTAAAGA
TTGTTACGAAGAATATTATGCCGCAGTTGGTATCTGTTATCGTGACTACCACTTCACAGATGTTGCCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGATTAGGTCTTCCTGTAACAGTGCCAAGTTTGGGACGCCTGATTTCAGATTATTC
TCAAAATGTGACGACGAATGCCTACCTCTTTTGGATTCCACTCACAACTCTGATTTTGGTATCTCTTACCTTCTTCGTAG
TTGGTCAAAACTTAGCCGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CQ66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

84.091

100

0.841
  amiD Streptococcus thermophilus LMD-9

84.091

100

0.841