Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FOC72_RS01065 Genome accession   NZ_CP054570
Coordinates   219789..220715 (+) Length   308 a.a.
NCBI ID   WP_002893618.1    Uniprot ID   A0A427ZQ80
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 214789..225715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS01050 (FOC72_01050) amiC 216280..217776 (+) 1497 WP_002893622.1 ABC transporter permease Regulator
  FOC72_RS01055 (FOC72_01055) amiD 217776..218702 (+) 927 WP_002893621.1 oligopeptide ABC transporter permease OppC Regulator
  FOC72_RS01060 (FOC72_01060) amiE 218711..219778 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  FOC72_RS01065 (FOC72_01065) amiF 219789..220715 (+) 927 WP_002893618.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34855.82 Da        Isoelectric Point: 5.6787

>NTDB_id=453479 FOC72_RS01065 WP_002893618.1 219789..220715(+) (amiF) [Streptococcus sanguinis strain FDAARGOS_770]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDIFYEGKKINGKKSKA
EEADLIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFDSEEDRQRKVKDIINEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
HPVHPYTQSLLSAVPIPDPILERKKVLKVYDPDQHDYSVDKPEMAEIRPGHYVWANKAELEKYKQEQE

Nucleotide


Download         Length: 927 bp        

>NTDB_id=453479 FOC72_RS01065 WP_002893618.1 219789..220715(+) (amiF) [Streptococcus sanguinis strain FDAARGOS_770]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAATTTGTGGCAGTTAAAAA
TGCAAATTTCTTCATCAATAAGGGAGAAACTTTCTCTCTTGTAGGAGAGTCAGGCTCTGGTAAGACTACTATTGGTCGAG
CTATTATTGGCCTTAATGATACCAGTGCAGGTGATATCTTCTATGAAGGCAAAAAGATTAATGGTAAAAAGTCAAAAGCA
GAAGAAGCGGACTTGATTCGCAAGATTCAGATGATTTTCCAAGACCCGGCTGCCAGTCTGAATGAACGTGCAACGGTTGA
CTATATCATATCTGAGGGTCTCTATAATTACCATTTGTTTGATAGCGAAGAAGATCGTCAAAGAAAAGTCAAAGATATCA
TCAATGAAGTTGGCTTGTTAGCTGAGCATTTAACTCGCTATCCTCACGAATTCTCTGGTGGACAGCGTCAGCGGATTGGG
ATTGCTCGTGCTCTGGTCATGCAACCAGACTTCGTAATTGCAGATGAGCCGATTTCTGCCTTGGACGTATCTGTTCGGGC
TCAGGTTTTGAATCTTTTGAAAAAATTTCAAAAAGAGCTTGGCTTGACCTACCTGTTTATTGCCCATGACCTTTCGGTAG
TTCGTTTTATTTCTGATCGTATCGCCGTGATTTACAAAGGTGTCATTGTAGAAGTGGCAGAGACAGAGGAGCTGTTCAAC
CATCCTGTCCATCCTTACACACAATCCTTACTCTCAGCTGTACCAATTCCTGACCCAATCTTGGAGCGTAAAAAAGTGTT
GAAGGTCTATGATCCTGACCAGCACGATTATTCAGTTGATAAACCAGAAATGGCAGAGATTCGTCCGGGACACTACGTCT
GGGCTAATAAAGCTGAACTCGAAAAGTATAAACAAGAACAAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427ZQ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.668

99.675

0.854
  amiF Streptococcus thermophilus LMG 18311

85.016

99.675

0.847
  amiF Streptococcus thermophilus LMD-9

84.691

99.675

0.844