Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HUF98_RS18415 Genome accession   NZ_CP054560
Coordinates   3814916..3816046 (+) Length   376 a.a.
NCBI ID   WP_002013158.1    Uniprot ID   A0A1S8V1K1
Organism   Acinetobacter baumannii strain YC103     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3809916..3821046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS18390 (HUF98_18305) - 3810176..3810382 (-) 207 WP_000182542.1 hypothetical protein -
  HUF98_RS18395 (HUF98_18310) - 3810436..3812550 (-) 2115 WP_065712619.1 TonB-dependent copper receptor -
  HUF98_RS18400 (HUF98_18315) - 3812623..3813051 (-) 429 WP_000231981.1 DUF2946 family protein -
  HUF98_RS18405 (HUF98_18320) def 3813088..3813618 (-) 531 WP_001196539.1 peptide deformylase -
  HUF98_RS18410 (HUF98_18325) tsaP 3813741..3814895 (+) 1155 WP_140952760.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HUF98_RS18415 (HUF98_18330) dprA 3814916..3816046 (+) 1131 WP_002013158.1 DNA-processing protein DprA Machinery gene
  HUF98_RS18420 (HUF98_18335) - 3816097..3816666 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  HUF98_RS18425 (HUF98_18340) - 3817058..3817978 (-) 921 WP_000084546.1 DMT family transporter -
  HUF98_RS18430 (HUF98_18345) - 3818084..3818734 (-) 651 WP_085943488.1 TetR/AcrR family transcriptional regulator -
  HUF98_RS18435 (HUF98_18350) - 3818871..3820085 (+) 1215 WP_000372838.1 MFS transporter -
  HUF98_RS18440 (HUF98_18355) - 3820107..3820871 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41900.40 Da        Isoelectric Point: 6.5418

>NTDB_id=453324 HUF98_RS18415 WP_002013158.1 3814916..3816046(+) (dprA) [Acinetobacter baumannii strain YC103]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTADDSGYPSQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=453324 HUF98_RS18415 WP_002013158.1 3814916..3816046(+) (dprA) [Acinetobacter baumannii strain YC103]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAACGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACTGATTTTATTTTAACGGCAGATGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCACAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S8V1K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.404

100

0.984
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.604

100

0.715
  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378