Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I6H72_RS04210 Genome accession   NZ_CP066055
Coordinates   853455..854087 (-) Length   210 a.a.
NCBI ID   WP_198458351.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 848455..859087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS04180 (I6H72_04180) - 848828..849604 (+) 777 Protein_835 aminoglycoside 3'-phosphotransferase -
  I6H72_RS04185 (I6H72_04185) recX 849668..850444 (+) 777 WP_006267569.1 recombination regulator RecX Regulator
  I6H72_RS04190 (I6H72_04190) - 850531..851064 (+) 534 WP_003070217.1 DUF402 domain-containing protein -
  I6H72_RS04195 (I6H72_04195) - 851184..851501 (+) 318 WP_006269734.1 DUF960 domain-containing protein -
  I6H72_RS04200 (I6H72_04200) - 851621..852013 (-) 393 WP_020997633.1 S1 RNA-binding domain-containing protein -
  I6H72_RS04205 (I6H72_04205) - 852015..853415 (-) 1401 WP_198458350.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  I6H72_RS04210 (I6H72_04210) vraR 853455..854087 (-) 633 WP_198458351.1 response regulator transcription factor Regulator
  I6H72_RS04215 (I6H72_04215) - 854089..855084 (-) 996 WP_198458352.1 sensor histidine kinase -
  I6H72_RS04220 (I6H72_04220) liaF 855081..855779 (-) 699 WP_198458353.1 cell wall-active antibiotics response protein LiaF -
  I6H72_RS04225 (I6H72_04225) stkP 856042..857925 (-) 1884 WP_020997630.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  I6H72_RS04230 (I6H72_04230) - 857922..858662 (-) 741 WP_003028411.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23655.24 Da        Isoelectric Point: 4.8120

>NTDB_id=453319 I6H72_RS04210 WP_198458351.1 853455..854087(-) (vraR) [Streptococcus constellatus strain FDAARGOS_1015]
MHILLVDDHEMVRLGLKGYLDLQDDVDVVAEASNGREGVEKALELRPDVIMMDIVMPEMSGIEATLAILKEWPEAKILIL
TSYLDNEKIYPVLDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEELTARERDILGLLAKGY
ENQRIADELFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHHLVPQDDI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=453319 I6H72_RS04210 WP_198458351.1 853455..854087(-) (vraR) [Streptococcus constellatus strain FDAARGOS_1015]
ATGCATATTTTATTAGTAGATGACCATGAAATGGTACGACTTGGCTTGAAAGGTTATTTGGATTTACAAGACGATGTGGA
TGTAGTGGCAGAAGCTTCAAATGGTCGCGAAGGAGTTGAAAAAGCTTTGGAGTTGCGCCCAGATGTGATTATGATGGACA
TTGTTATGCCTGAAATGAGTGGAATTGAAGCAACTCTAGCTATTTTAAAAGAATGGCCTGAAGCTAAGATTCTCATTCTG
ACTTCTTATTTGGATAATGAAAAAATTTACCCAGTTTTAGATGCAGGAGCTAAAGGATACATGCTTAAAACATCTAGTGC
TGACGATATCTTACGAGCAGTTCGAAAGGTAGCCAAGGGTGAGCTTGCTATTGAAACAGAGGTCAGTCAGAAAGTGGAAT
ACCATCGAAATCATATTGAATTACATGAAGAGCTAACAGCGCGTGAGCGCGATATTTTAGGACTACTGGCGAAGGGGTAT
GAAAATCAACGCATAGCAGATGAGTTGTTTATTTCTTTAAAGACAGTGAAAACGCATGTGTCGAATATTTTGTCCAAATT
GGCAGTAAGTGATCGTACACAAGCTGTTGTCTATGCCTTCCAGCATCACCTCGTCCCACAAGATGACATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.883

98.095

0.529
  degU Bacillus subtilis subsp. subtilis str. 168

39.286

100

0.419