Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HUF98_RS17960 Genome accession   NZ_CP054560
Coordinates   3721639..3721965 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain YC103     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3716639..3726965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS17940 (HUF98_17860) - 3716741..3717370 (-) 630 WP_000219970.1 FHA domain-containing protein -
  HUF98_RS17945 (HUF98_17865) gspD 3717411..3719687 (-) 2277 WP_001196427.1 type II secretion system secretin GspD -
  HUF98_RS17950 (HUF98_17870) - 3719729..3720565 (-) 837 WP_000870031.1 type II secretion system protein N -
  HUF98_RS17955 (HUF98_17875) gspN 3720565..3721308 (-) 744 WP_000730343.1 type II secretion system protein N -
  HUF98_RS17960 (HUF98_17880) hns 3721639..3721965 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HUF98_RS17965 (HUF98_17885) - 3722160..3722600 (-) 441 WP_179007020.1 acyl-CoA thioesterase -
  HUF98_RS17970 (HUF98_17890) - 3722608..3723801 (-) 1194 WP_179007017.1 heme biosynthesis protein HemY -
  HUF98_RS17975 (HUF98_17895) - 3723811..3724650 (-) 840 WP_029424458.1 hypothetical protein -
  HUF98_RS17980 (HUF98_17900) - 3724659..3725426 (-) 768 WP_140952793.1 uroporphyrinogen-III synthase -
  HUF98_RS17985 (HUF98_17905) hemC 3725431..3726348 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=453318 HUF98_RS17960 WP_000801427.1 3721639..3721965(-) (hns) [Acinetobacter baumannii strain YC103]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=453318 HUF98_RS17960 WP_000801427.1 3721639..3721965(-) (hns) [Acinetobacter baumannii strain YC103]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAGCCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1