Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HUF98_RS15745 Genome accession   NZ_CP054560
Coordinates   3263398..3263808 (-) Length   136 a.a.
NCBI ID   WP_033853185.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258398..3268808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS15715 (HUF98_15640) - 3258484..3258753 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HUF98_RS15720 (HUF98_15645) rapZ 3258750..3259601 (-) 852 WP_000821671.1 RNase adapter RapZ -
  HUF98_RS15725 (HUF98_15650) panC 3259624..3260472 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  HUF98_RS15730 (HUF98_15655) panB 3260476..3261285 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HUF98_RS15735 (HUF98_15660) folK 3261331..3261813 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HUF98_RS15740 (HUF98_15665) pcnB 3261810..3263273 (-) 1464 WP_033853184.1 polynucleotide adenylyltransferase PcnB -
  HUF98_RS15745 (HUF98_15670) comEA 3263398..3263808 (-) 411 WP_033853185.1 ComEA family DNA-binding protein Machinery gene
  HUF98_RS15750 (HUF98_15675) mazG 3263777..3264583 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  HUF98_RS15755 (HUF98_15680) - 3264695..3265468 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  HUF98_RS15760 (HUF98_15685) - 3265513..3267819 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15642.84 Da        Isoelectric Point: 10.3828

>NTDB_id=453310 HUF98_RS15745 WP_033853185.1 3263398..3263808(-) (comEA) [Acinetobacter baumannii strain YC103]
MQYSMRFWKNKYFVLISLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=453310 HUF98_RS15745 WP_033853185.1 3263398..3263808(-) (comEA) [Acinetobacter baumannii strain YC103]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAAGTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382