Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   BAXH7_RS12230 Genome accession   NC_017191
Coordinates   2426751..2427065 (-) Length   104 a.a.
NCBI ID   WP_014470662.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens XH7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2421751..2432065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAXH7_RS12185 (BAXH7_02580) sinI 2422435..2422608 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  BAXH7_RS12190 (BAXH7_02581) sinR 2422642..2422977 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  BAXH7_RS12195 (BAXH7_02582) tasA 2423025..2423810 (-) 786 WP_013352862.1 biofilm matrix protein TasA -
  BAXH7_RS12200 (BAXH7_02583) sipW 2423875..2424459 (-) 585 WP_013352863.1 signal peptidase I SipW -
  BAXH7_RS12205 (BAXH7_02584) tapA 2424431..2425102 (-) 672 WP_013352864.1 amyloid fiber anchoring/assembly protein TapA -
  BAXH7_RS12210 (BAXH7_02585) - 2425360..2425689 (+) 330 WP_013352865.1 DUF3889 domain-containing protein -
  BAXH7_RS12215 (BAXH7_02586) - 2425730..2425909 (-) 180 WP_013352866.1 YqzE family protein -
  BAXH7_RS12220 (BAXH7_02587) comGG 2425963..2426340 (-) 378 WP_013352867.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAXH7_RS12225 (BAXH7_02588) comGF 2426342..2426842 (-) 501 WP_013352868.1 competence type IV pilus minor pilin ComGF -
  BAXH7_RS12230 (BAXH7_02589) comGE 2426751..2427065 (-) 315 WP_014470662.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAXH7_RS12235 (BAXH7_02590) comGD 2427049..2427486 (-) 438 WP_013352869.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAXH7_RS12240 (BAXH7_02591) comGC 2427476..2427742 (-) 267 WP_044051905.1 competence type IV pilus major pilin ComGC Machinery gene
  BAXH7_RS12245 (BAXH7_02592) comGB 2427789..2428826 (-) 1038 WP_013352871.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAXH7_RS12250 (BAXH7_02593) comGA 2428813..2429883 (-) 1071 WP_013352872.1 competence type IV pilus ATPase ComGA Machinery gene
  BAXH7_RS12255 (BAXH7_02595) - 2430077..2431027 (-) 951 WP_013352873.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11934.89 Da        Isoelectric Point: 6.2120

>NTDB_id=45331 BAXH7_RS12230 WP_014470662.1 2426751..2427065(-) (comGE) [Bacillus amyloliquefaciens XH7]
MQNGNKGFSTIETLSAMAIWLFLMISIVPVWTGMLTDNLKIEEHQEVYQLLHKHISAYMMSGKKQPSPDVTWKEDGDYYK
VCAAVRGEKEMCLSILKTDWLYAS

Nucleotide


Download         Length: 315 bp        

>NTDB_id=45331 BAXH7_RS12230 WP_014470662.1 2426751..2427065(-) (comGE) [Bacillus amyloliquefaciens XH7]
ATGCAGAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCTATTTGGCTGTTCCTTATGATTTCTAT
CGTTCCGGTCTGGACGGGCATGCTGACAGACAATCTGAAAATAGAAGAACACCAGGAAGTGTACCAGCTTCTTCATAAAC
ATATCAGCGCATATATGATGTCCGGAAAAAAGCAGCCATCTCCCGATGTGACGTGGAAGGAGGATGGTGATTATTACAAA
GTCTGTGCAGCTGTCCGCGGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

43.478

100

0.481

Multiple sequence alignment