Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   HPAKL86_RS03050 Genome accession   NC_019563
Coordinates   618808..619182 (-) Length   124 a.a.
NCBI ID   WP_015086992.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik86     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 613808..624182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL86_RS03030 (HPAKL86_02960) pssA 614987..615700 (-) 714 WP_015086989.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  HPAKL86_RS07735 - 615690..615908 (-) 219 WP_041200235.1 hypothetical protein -
  HPAKL86_RS03040 (HPAKL86_02965) ftsH 615911..617809 (-) 1899 WP_015086990.1 ATP-dependent zinc metalloprotease FtsH -
  HPAKL86_RS03045 (HPAKL86_02970) prmA 617818..618795 (-) 978 WP_162470545.1 50S ribosomal protein L11 methyltransferase -
  HPAKL86_RS03050 (HPAKL86_02975) chpA 618808..619182 (-) 375 WP_015086992.1 chemotaxis response regulator CheY Regulator
  HPAKL86_RS03055 (HPAKL86_02980) - 619436..620086 (+) 651 WP_015086993.1 outer membrane protein -
  HPAKL86_RS03065 (HPAKL86_02985) - 620218..620625 (-) 408 WP_015086994.1 hypothetical protein -
  HPAKL86_RS03070 (HPAKL86_02990) - 620628..620870 (-) 243 WP_015086995.1 PP0621 family protein -
  HPAKL86_RS03075 (HPAKL86_02995) rsmG 620864..621400 (-) 537 WP_015086996.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPAKL86_RS03080 (HPAKL86_03000) queA 621397..622434 (-) 1038 WP_015086997.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPAKL86_RS03085 (HPAKL86_03005) tatC 622435..623184 (-) 750 WP_015086998.1 twin-arginine translocase subunit TatC -
  HPAKL86_RS03090 (HPAKL86_03010) tatB 623177..623659 (-) 483 WP_015086999.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13833.13 Da        Isoelectric Point: 4.6381

>NTDB_id=45328 HPAKL86_RS03050 WP_015086992.1 618808..619182(-) (chpA) [Helicobacter pylori Aklavik86]
MKLLVVDDSSTMRRIIGNTLSRLGYEDILEAEHGVEALEKLNANPDIKVLITDWNMPEMNGLDLVIKVRADERFKEIPII
MITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND

Nucleotide


Download         Length: 375 bp        

>NTDB_id=45328 HPAKL86_RS03050 WP_015086992.1 618808..619182(-) (chpA) [Helicobacter pylori Aklavik86]
TTGAAACTACTGGTAGTAGATGATAGCTCAACTATGAGAAGAATTATTGGAAACACACTTTCACGCTTAGGCTATGAAGA
TATTTTAGAAGCTGAACATGGGGTGGAAGCTTTGGAGAAACTAAACGCTAATCCGGACATTAAGGTGCTTATCACAGATT
GGAACATGCCTGAAATGAACGGGTTGGATCTCGTTATAAAGGTGCGTGCGGATGAGCGCTTTAAAGAAATCCCTATTATT
ATGATCACCACAGAGGGCGGTAAGGCTGAGGTCATTACGGCTTTGAAAGCGGGTGTGAATAACTATATTGTGAAGCCTTT
TACCCCCCAGGTTTTGAAAGAAAAATTAGAGGTTGTTTTAGGGACAAACGATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

37.815

95.968

0.363

Multiple sequence alignment