Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   I6H77_RS03090 Genome accession   NZ_CP066021
Coordinates   646959..647969 (-) Length   336 a.a.
NCBI ID   WP_001090634.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 641959..652969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS03075 (I6H77_03075) - 642009..643988 (-) 1980 WP_000731515.1 CAP domain-containing protein -
  I6H77_RS03080 (I6H77_03080) - 644487..645878 (-) 1392 WP_000453116.1 Cof-type HAD-IIB family hydrolase -
  I6H77_RS03085 (I6H77_03085) - 645944..646906 (+) 963 WP_001124809.1 asparaginase -
  I6H77_RS03090 (I6H77_03090) ccpA 646959..647969 (-) 1011 WP_001090634.1 catabolite control protein A Regulator
  I6H77_RS03095 (I6H77_03095) - 648174..648491 (+) 318 WP_000886045.1 DUF960 domain-containing protein -
  I6H77_RS03100 (I6H77_03100) - 648542..649825 (-) 1284 WP_001125354.1 membrane protein -
  I6H77_RS03105 (I6H77_03105) folK 649818..650639 (-) 822 WP_000372502.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6H77_RS03110 (I6H77_03110) folE 650798..651352 (-) 555 WP_000380914.1 GTP cyclohydrolase I FolE -
  I6H77_RS03115 (I6H77_03115) - 651333..652655 (-) 1323 WP_001002856.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37201.10 Da        Isoelectric Point: 5.0573

>NTDB_id=452971 I6H77_RS03090 WP_001090634.1 646959..647969(-) (ccpA) [Streptococcus oralis strain FDAARGOS_1020]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
TLAKGIDDIAEMYKYNIVLANSDEDDEKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLLEENEKIAFVSGPLVDDINGKVRLIGYKEALKKAGHSYSEGLVFESKYSYDDGYALAERLISSQ
ATAAVVTGDELAAGVLNGLADHGVSVPEEFEIITTDDSQIARFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERRSTRKRN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=452971 I6H77_RS03090 WP_001090634.1 646959..647969(-) (ccpA) [Streptococcus oralis strain FDAARGOS_1020]
ATGAACACAGATGATACAGTAACGATTTATGACGTCGCCCGTGAAGCAGGAGTTTCGATGGCAACAGTTAGCCGTGTCGT
TAATGGCAACAAGAATGTTAAAGAGAACACCCGAAAAAAAGTCCTAGAAGTGATTGATCGCTTGGACTATCGTCCAAATG
CGGTAGCCCGTGGTTTAGCTAGCAAGAAAACAACGACAGTCGGAGTTGTGATTCCGAACATTACCAATGGTTATTTCTCA
ACACTTGCTAAGGGGATTGACGACATTGCTGAAATGTACAAGTATAACATTGTCCTTGCAAATAGTGATGAGGATGATGA
AAAGGAAGTTTCAGTGGTCAACACTCTCTTTTCAAAACAAGTCGATGGGATTATCTTTATGGGCTATCACTTGACTGAAA
AGATTCGTTCAGAGTTTTCTCGTTCACGGACACCGGTTGTTCTTGCTGGTACTGTGGATGTAGAACACCAACTTCCAAGT
GTCAATATCGACTACAAACAAGCAACGATTGATGCCGTGAGCTATCTTCTCGAAGAAAACGAAAAGATTGCTTTTGTGAG
TGGACCACTCGTCGATGATATCAATGGTAAGGTTCGTTTGATCGGTTACAAGGAAGCCCTGAAAAAAGCTGGACATTCTT
ATAGCGAGGGCTTGGTCTTCGAATCAAAATACAGCTATGACGATGGTTATGCCTTGGCAGAACGCTTGATTTCATCACAA
GCTACAGCCGCAGTTGTAACAGGTGATGAATTGGCGGCAGGTGTGTTGAATGGTTTGGCTGACCATGGCGTATCTGTGCC
GGAAGAGTTTGAAATCATTACGACAGATGACTCTCAGATTGCACGATTCACTCGTCCAAACTTGACGACTATTGCCCAAC
CTCTTTATGACTTAGGTGCTATCAGCATGCGTATGTTGACTAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAGCGCCGCTCTACACGAAAACGTAATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

94.03

99.702

0.938

  ccpA Streptococcus gordonii str. Challis substr. CH1

88.323

99.405

0.878

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568