Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I6H77_RS02560 Genome accession   NZ_CP066021
Coordinates   524784..525416 (-) Length   210 a.a.
NCBI ID   WP_000698402.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 519784..530416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS02545 (I6H77_02545) recD/recD2/recDB 520336..522705 (+) 2370 WP_000454456.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6H77_RS02550 (I6H77_02550) tig 522753..524036 (-) 1284 WP_000116506.1 trigger factor -
  I6H77_RS02555 (I6H77_02555) - 524127..524783 (-) 657 WP_000050041.1 DNA alkylation repair protein -
  I6H77_RS02560 (I6H77_02560) vraR 524784..525416 (-) 633 WP_000698402.1 response regulator Regulator
  I6H77_RS02565 (I6H77_02565) - 525427..526425 (-) 999 WP_000744931.1 sensor histidine kinase -
  I6H77_RS02570 (I6H77_02570) liaF 526422..527120 (-) 699 WP_000714491.1 cell wall-active antibiotics response protein LiaF -
  I6H77_RS02575 (I6H77_02575) - 527474..529993 (-) 2520 WP_000734390.1 SEC10/PgrA surface exclusion domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23603.18 Da        Isoelectric Point: 4.7177

>NTDB_id=452958 I6H77_RS02560 WP_000698402.1 524784..525416(-) (vraR) [Streptococcus oralis strain FDAARGOS_1020]
MKILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGAQGIDLALELRPDVIVMDIVMPEMNGIDATLAILKEWPEAKILIV
TSYLDNEKIMPVLNAGAKGYMLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY
ENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLVGQEDF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=452958 I6H77_RS02560 WP_000698402.1 524784..525416(-) (vraR) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAAATTTTACTGGTAGATGACCATGAAATGGTCCGATTGGGCTTGAAAAGCTATTTTGATCTCCAAGACGATGTGGA
AGTTGTGGGCGAGGCTGCCAATGGGGCTCAAGGTATTGACTTGGCCTTGGAACTGCGTCCAGATGTCATTGTCATGGATA
TCGTCATGCCTGAGATGAATGGGATTGATGCAACCTTGGCCATCCTCAAAGAATGGCCTGAAGCCAAGATATTAATTGTC
ACCTCTTACTTGGACAATGAAAAAATCATGCCGGTCTTGAACGCTGGTGCCAAAGGCTATATGCTTAAGACTTCAAGTGC
AGATGAATTGCTCCATGCTCTCCGTAAGGTGGCTGCTGGCGAGCTGGCTATTGAACAAGAGGTCAGCAAGAAGGTCGAAT
ACCACCGTAATCATATGGAGCTTCATGAGGAGCTGACTGCGCGTGAGCGAGACGTACTTCAACTCATCGCCAAGGGCTAC
GAAAATCAGCGGATTGCAGATGAACTCTTTATCTCTCTCAAGACGGTCAAGACCCATGTGTCCAATATCCTTGCTAAACT
TGAGGTCAGCGATCGCACCCAGGCGGCGGTCTATGCCTTCCAGCACCACTTGGTCGGGCAGGAGGACTTTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.153

99.524

0.519
  degU Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.405