Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6H77_RS02545 Genome accession   NZ_CP066021
Coordinates   520336..522705 (+) Length   789 a.a.
NCBI ID   WP_000454456.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 515336..527705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS02520 (I6H77_02520) mutS/mutS2 515336..517672 (-) 2337 WP_001092924.1 endonuclease MutS2 Machinery gene
  I6H77_RS02525 (I6H77_02525) - 517773..518321 (-) 549 WP_000623532.1 CvpA family protein -
  I6H77_RS02530 (I6H77_02530) zapA 518318..518620 (-) 303 WP_000002028.1 cell division protein ZapA -
  I6H77_RS02535 (I6H77_02535) rnhC 518707..519588 (+) 882 WP_000146906.1 ribonuclease HIII -
  I6H77_RS02540 (I6H77_02540) lepB 519592..520206 (+) 615 WP_001083991.1 signal peptidase I -
  I6H77_RS02545 (I6H77_02545) recD/recD2/recDB 520336..522705 (+) 2370 WP_000454456.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6H77_RS02550 (I6H77_02550) tig 522753..524036 (-) 1284 WP_000116506.1 trigger factor -
  I6H77_RS02555 (I6H77_02555) - 524127..524783 (-) 657 WP_000050041.1 DNA alkylation repair protein -
  I6H77_RS02560 (I6H77_02560) vraR 524784..525416 (-) 633 WP_000698402.1 response regulator Regulator
  I6H77_RS02565 (I6H77_02565) - 525427..526425 (-) 999 WP_000744931.1 sensor histidine kinase -
  I6H77_RS02570 (I6H77_02570) liaF 526422..527120 (-) 699 WP_000714491.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88473.31 Da        Isoelectric Point: 4.5741

>NTDB_id=452957 I6H77_RS02545 WP_000454456.1 520336..522705(+) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_1020]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQINRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLESIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELAHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKKQIQDLETIHKH
ISTVEQELGIQYDTIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLSILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKPDRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVNFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIETNIEESKQAFSETATASDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=452957 I6H77_RS02545 WP_000454456.1 520336..522705(+) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_1020]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGGATTATTTTTGAAAATCCCAGTAATTTTTATCGTATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTCACCGGAACCATGGCGGACGTGATTGAAGGGG
AAGACTACACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTTCAGATCAACCGTTATGAACGCGCA
AAACCAACTAGTAAGGGCCTCGTCAAGTACTTTTCTAGCAGTCATTTCAAGGGAATTGGTCTCAAAACGGCCCAAAAAAT
CGTTGATAGCTACGGTGACAATACCATAGACGAAATTCTGGAGCATCCTGAAAAGCTGGAAAGCATTGCAGGACTCTCTG
CAAAAAACCGTGAGGCTTTTGTTTCCACCCTCCGTCTCAACTATGGGACAGAAATGGTCTTGGCAAAACTAGCTAACTAC
GGCATTCCCAATAAACTGGCCTTTCAAATTCAAGACTTTTACAAGGAAGAAACCCTCGATGTGGTTGAAAATTATCCCTA
CCAACTGGTTGAAGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAATTGGCTGCCGAACTAGGCATCGAAAGTCAGG
CACCCGAACGCTTCCGTGCTGGCCTTGTCCACAGTCTCTTTCAGGGATGTATGGATACGGGTGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAGACCCTGACTCTCCTCGAATCTTCCCGTCCCGTGGAACTGGATCCCAGCCAAGTAGCTCAGGA
ATTAGCTCATTTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCCGAAG
AAGGCATTCGCAGTCACTTGGTTCGCATCCTTGAAAAAGGAAAGAAACAAATTCAGGATCTAGAAACCATTCACAAGCAT
ATCTCTACTGTCGAGCAAGAACTGGGGATTCAGTACGATACCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACTGGTAAGACGACGGTTATCAATGGGATTATCGCTGTTTATGCCCTTTTAG
AAGGGCTTGATCTCAGGAAGAAAAGCAACCTGTCGATTCTTCTCGCTGCTCCAACTGGTCGAGCGGCTCGGCGCATGAAT
GAATTAACAGGTTTGCCTAGCGCGACCATACACCGTCATTTGGGGATGACAGGAGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCCGATTTTATCATTGTAGATGAGTTTTCCATGGTGGACACTTGGCTAGCCAACCAACTTTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTAGGTGATAGCGACCAGTTACCTTCTGTTAGTCCCGGACAAGTCCTGGCTGAC
CTGCTCCAGATACCCCTGATTCCTCAGACTCGCTTGGAACGGATTTACCGTCAGAGTGAAGAATCAACTATCGTTACCTT
GGCGAGTCAGATTCGACAAGGCATCTTGCCAGCCGACTTTACCCAGAAAAAACCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATCCCAGCTACCATTGAGAAAATCCTCGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGAGATATTCAGGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTGAACTTTGAAGCAACTCAGTGTCACTATCGAACAGGGGACAAGGTCATTCACCTAGTCAACGATGCCGAAG
TTAATGTCTTTAACGGAGACCTAGGCTACATCACAGACCTGATTCCTGGAAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTACCCACGTAACGAATGGTACAAGATTCGACTAGCCTATGCCATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAACGCAATC
TCATCTACACAGCTATCACACGAGCCAAGAGCAAGCTCATCCTTCTTGGCGAGTTACAGGCCTTTGACTATGCAGTTAAG
CATATCGGGACTGCTCGCAAGACCTATCTGATTGAGCGTTTCAGTGATTTAATTGAAACTAATATTGAAGAAAGTAAACA
AGCCTTCTCTGAAACTGCCACAGCAAGTGACTCTGAACAATCCTACATCCTCACCGAGGAAAACTGGTCTAGCATCCCAG
CCATGATCGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-517)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.021

95.311

0.401