Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HUE57_RS15425 Genome accession   NZ_CP054491
Coordinates   2841119..2842423 (+) Length   434 a.a.
NCBI ID   WP_078483450.1    Uniprot ID   A0A1T2L657
Organism   Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2836119..2847423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE57_RS15400 (HUE57_15400) - 2836452..2836979 (+) 528 WP_078483445.1 nitroreductase family protein -
  HUE57_RS15405 (HUE57_15405) - 2836995..2837333 (-) 339 WP_078483446.1 P-II family nitrogen regulator -
  HUE57_RS15410 (HUE57_15410) - 2837381..2839015 (-) 1635 WP_078483447.1 NAD+ synthase -
  HUE57_RS15415 (HUE57_15415) - 2839187..2839399 (+) 213 WP_078483448.1 PP0621 family protein -
  HUE57_RS15420 (HUE57_15420) - 2839431..2841107 (+) 1677 WP_078483449.1 sensor histidine kinase -
  HUE57_RS15425 (HUE57_15425) pilR 2841119..2842423 (+) 1305 WP_078483450.1 sigma-54-dependent transcriptional regulator Regulator
  HUE57_RS15430 (HUE57_15430) - 2842428..2842853 (+) 426 WP_078483451.1 RDD family protein -
  HUE57_RS15435 (HUE57_15435) lptG 2842857..2843921 (-) 1065 WP_172840232.1 LPS export ABC transporter permease LptG -
  HUE57_RS15440 (HUE57_15440) lptF 2843918..2845054 (-) 1137 WP_135622130.1 LPS export ABC transporter permease LptF -
  HUE57_RS15445 (HUE57_15445) - 2845208..2846698 (+) 1491 WP_078483454.1 leucyl aminopeptidase -
  HUE57_RS15450 (HUE57_15450) - 2846712..2847134 (+) 423 WP_078483455.1 DNA polymerase III subunit chi -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 47951.96 Da        Isoelectric Point: 5.0034

>NTDB_id=452884 HUE57_RS15425 WP_078483450.1 2841119..2842423(+) (pilR) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MSRPLALIVDDEPDIRELLEITLGRMEIDTHAAADLAEAVALLERADFDLCLTDMRLPDGSGIELVKHIQNSAPQTPVAV
ITAHGNMESAVESLKSGAFDFVSKPVDLQVLRKLVATAIKLSTPTESSKKLTLLGDSKAMQRLRATITKLSRSQAPVYIS
GESGSGKELAARMIHEQGPRSSKPFVPVNCGAIPAELMESEFFGHIKGSFTGAVSDKQGLFQAADGGTLFLDEVADLPLH
MQVKLLRVIQEKAIRPVGSHQEQKIDVRILSATHKNLKQMVTDEQFRQDLFYRINVIELHVPSLRERTEDITLLADHILA
GFAEESGLESPRLSAEASAALSDYPFPGNVRELENILERAMTLCEENTIMAEDLALPQTIETQGELLPNRVEDLERQEIV
KALEQTHYNKTAAAKLLGLTLRQLRYRLQKLEIE

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=452884 HUE57_RS15425 WP_078483450.1 2841119..2842423(+) (pilR) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
ATGAGCCGCCCGCTTGCCCTGATTGTTGATGACGAACCCGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGTATGGA
GATCGATACCCACGCGGCAGCTGATCTGGCTGAGGCCGTGGCGCTACTTGAACGTGCAGATTTTGATCTCTGCCTCACCG
ATATGCGCCTACCCGATGGTAGCGGTATCGAACTGGTCAAACATATTCAGAACAGCGCCCCGCAAACCCCCGTTGCTGTC
ATCACCGCCCACGGCAACATGGAGTCGGCGGTCGAGTCGCTCAAGAGCGGTGCCTTCGATTTTGTCTCCAAACCGGTCGA
TCTACAGGTGCTGAGAAAACTGGTCGCTACGGCAATCAAACTCAGCACGCCAACCGAATCATCAAAAAAACTGACCCTGC
TCGGCGACTCCAAAGCGATGCAGCGACTTCGTGCCACCATCACCAAACTCTCGCGCAGTCAGGCCCCGGTCTATATCAGC
GGTGAATCGGGTAGCGGCAAGGAGCTGGCGGCACGCATGATCCATGAACAGGGACCACGCAGCAGTAAGCCGTTTGTACC
GGTCAACTGCGGTGCAATTCCCGCCGAGCTGATGGAGAGCGAATTCTTCGGCCACATCAAGGGAAGCTTTACTGGAGCCG
TGAGCGACAAACAGGGGCTGTTTCAGGCCGCCGATGGCGGCACACTGTTTCTCGATGAGGTGGCCGACCTGCCACTGCAT
ATGCAGGTTAAGCTACTGCGCGTGATTCAGGAGAAGGCGATCCGTCCGGTCGGTTCCCATCAGGAGCAGAAGATCGACGT
TCGCATCCTCAGCGCCACCCATAAAAACCTCAAACAGATGGTCACCGATGAACAGTTCCGCCAGGATCTTTTCTATCGCA
TCAACGTTATTGAACTCCATGTACCGAGTCTGCGCGAACGTACCGAAGACATAACGCTATTGGCCGATCACATCCTTGCA
GGCTTTGCCGAAGAGTCGGGCCTCGAGAGCCCCCGTCTCTCAGCTGAGGCAAGCGCAGCACTCAGCGACTACCCATTCCC
CGGTAATGTGCGCGAATTGGAGAATATTCTTGAGCGCGCCATGACGCTGTGCGAAGAGAACACCATCATGGCAGAGGATC
TGGCCCTGCCGCAGACAATCGAAACCCAGGGAGAGCTACTACCCAATCGAGTCGAGGATCTGGAGCGACAGGAGATCGTC
AAAGCCCTGGAGCAGACCCACTACAATAAAACCGCTGCAGCAAAACTACTCGGCCTGACGCTACGCCAGCTCCGCTACCG
CCTGCAGAAACTCGAGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)

Bacterial regulatory protein, Fis family (HTH_8)

(391-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T2L657

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.596

100

0.652
  pilR Acinetobacter baumannii strain A118

47.619

100

0.507
  luxO Vibrio cholerae strain A1552

36.486

100

0.373