Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HT132_RS05660 Genome accession   NZ_CP054479
Coordinates   1115511..1116155 (+) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110511..1121155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS05635 (HT132_05635) - 1110953..1111294 (-) 342 WP_021495366.1 hypothetical protein -
  HT132_RS05640 (HT132_05640) degQ 1111760..1111900 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HT132_RS05645 (HT132_05645) - 1112085..1112963 (+) 879 WP_032860494.1 polyprenyl synthetase family protein -
  HT132_RS05650 (HT132_05650) comX 1112963..1113127 (+) 165 WP_007613432.1 competence pheromone ComX -
  HT132_RS05655 (HT132_05655) comP 1113139..1115430 (+) 2292 WP_099721970.1 histidine kinase Regulator
  HT132_RS05660 (HT132_05660) comA 1115511..1116155 (+) 645 WP_014418762.1 response regulator transcription factor Regulator
  HT132_RS05665 (HT132_05665) - 1116177..1116560 (+) 384 WP_104842774.1 hotdog fold thioesterase -
  HT132_RS05670 (HT132_05670) mnhG 1116600..1116974 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  HT132_RS05675 (HT132_05675) - 1116958..1117242 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  HT132_RS05680 (HT132_05680) - 1117242..1117718 (-) 477 WP_174532427.1 Na+/H+ antiporter subunit E -
  HT132_RS05685 (HT132_05685) - 1117724..1119204 (-) 1481 Protein_1089 Na+/H+ antiporter subunit D -
  HT132_RS05690 (HT132_05690) - 1119197..1119538 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  HT132_RS05695 (HT132_05695) - 1119538..1119969 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=452760 HT132_RS05660 WP_014418762.1 1115511..1116155(+) (comA) [Bacillus amyloliquefaciens strain R8-25]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=452760 HT132_RS05660 WP_014418762.1 1115511..1116155(+) (comA) [Bacillus amyloliquefaciens strain R8-25]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86