Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HT132_RS00800 Genome accession   NZ_CP054479
Coordinates   126455..126745 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 121455..131745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS00785 (HT132_00785) - 121677..123002 (-) 1326 WP_128496396.1 G5 and 3D domain-containing protein -
  HT132_RS00790 (HT132_00790) - 123137..123904 (-) 768 WP_021494159.1 TatD family hydrolase -
  HT132_RS00795 (HT132_00795) metG 123981..125972 (-) 1992 WP_094296506.1 methionine--tRNA ligase -
  HT132_RS00800 (HT132_00800) abrB 126455..126745 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HT132_RS00805 (HT132_00805) rsmI 126795..127676 (-) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HT132_RS00810 (HT132_00810) - 127651..127950 (-) 300 WP_099721929.1 GIY-YIG nuclease family protein -
  HT132_RS00815 (HT132_00815) - 127937..128680 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HT132_RS00820 (HT132_00820) yabA 128741..129100 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  HT132_RS00825 (HT132_00825) ricT 129115..129942 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HT132_RS00830 (HT132_00830) holB 129945..130934 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  HT132_RS00835 (HT132_00835) - 130946..131386 (-) 441 WP_004264730.1 YaaR family protein -
  HT132_RS00840 (HT132_00840) darA 131399..131728 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=452743 HT132_RS00800 WP_169510469.1 126455..126745(+) (abrB) [Bacillus amyloliquefaciens strain R8-25]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=452743 HT132_RS00800 WP_169510469.1 126455..126745(+) (abrB) [Bacillus amyloliquefaciens strain R8-25]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979