Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   I6H57_RS08005 Genome accession   NZ_CP065991
Coordinates   1710040..1710582 (-) Length   180 a.a.
NCBI ID   WP_005694712.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705040..1715582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS07980 (I6H57_07980) comM 1705291..1706820 (+) 1530 WP_005694706.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6H57_RS07985 (I6H57_07985) nfuA 1706864..1707448 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  I6H57_RS07990 (I6H57_07990) - 1707564..1708253 (-) 690 WP_032822376.1 ComF family protein -
  I6H57_RS07995 (I6H57_07995) comE 1708273..1709655 (-) 1383 WP_005694710.1 type IV pilus secretin PilQ Machinery gene
  I6H57_RS08000 (I6H57_08000) - 1709657..1710040 (-) 384 WP_005694711.1 hypothetical protein -
  I6H57_RS08005 (I6H57_08005) comC 1710040..1710582 (-) 543 WP_005694712.1 hypothetical protein Machinery gene
  I6H57_RS08010 (I6H57_08010) comB 1710579..1711094 (-) 516 WP_005694713.1 hypothetical protein Machinery gene
  I6H57_RS08015 (I6H57_08015) comA 1711078..1711926 (-) 849 WP_005694714.1 pilus assembly protein PilM Machinery gene
  I6H57_RS08020 (I6H57_08020) - 1712026..1714638 (+) 2613 WP_005694715.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21058.23 Da        Isoelectric Point: 6.6458

>NTDB_id=452741 I6H57_RS08005 WP_005694712.1 1710040..1710582(-) (comC) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MKNLIDEIVQKTAQGWLGKWLRLSQMVHAIFWLSALSAVIFLPVFRYVENSNERHRLDAELSLQQQEWEKQEKILQTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLLHLSLQGYFADLQQFLTALLRDIPKLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=452741 I6H57_RS08005 WP_005694712.1 1710040..1710582(-) (comC) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGAAGAATCTTATCGATGAGATTGTTCAAAAAACTGCACAAGGTTGGTTGGGGAAATGGCTTCGATTATCTCAAATGGT
GCATGCTATCTTTTGGTTGAGTGCACTAAGTGCGGTCATTTTTTTACCTGTTTTTCGTTACGTTGAAAATAGCAATGAAC
GACATCGACTTGACGCAGAATTGAGTTTGCAACAACAAGAGTGGGAGAAACAGGAAAAGATTTTACAAACTTTAAGGCAA
AAGTCAGACAGCCGACAACTTTCTCCAGAATTGGCTAATTCTGTGTTGCCGATCAATCAGCATGTTCAGGCATTGTTAAA
TGGGCGACTTCGAGCGTTGGATTTACGTTGGGATTTTTCTCAACATACTTTGTTACATTTGTCATTACAAGGCTATTTTG
CCGATTTACAGCAATTTTTGACCGCACTTTTAAGGGACATTCCTAAACTTTCGTTAACTCAATTAAACATTGAGAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGTGAGTTAATTTTCCAATTGAATAAGGACAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

41.718

90.556

0.378
  comC Haemophilus influenzae Rd KW20

41.104

90.556

0.372