Detailed information NTG0452704

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HUF19_RS04000
• Genome accession: NZ_CP054475
• Coordinates: 909081..910424 (-)
• Length: 447 a.a.
• NCBI ID: WP_260998603.1
• Uniprot ID: -
• Organism: Thalassolituus hydrocarboniclasticus strain alknpb1M-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 904081..915424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUF19_RS03980 (HUF19_03975)	-	904282..907266 (-)	2985	WP_260998599.1	PilC/PilY family type IV pilus protein	-
HUF19_RS03985 (HUF19_03980)	-	907268..907654 (-)	387	WP_260998600.1	hypothetical protein	-
HUF19_RS03990 (HUF19_03985)	-	907665..908237 (-)	573	WP_260998601.1	PilX N-terminal domain-containing pilus assembly protein	-
HUF19_RS03995 (HUF19_03990)	-	908354..908914 (-)	561	WP_260998602.1	GspH/FimT family pseudopilin	-
HUF19_RS04000 (HUF19_03995)	pilR	909081..910424 (-)	1344	WP_260998603.1	sigma-54 dependent transcriptional regulator	Regulator
HUF19_RS04005 (HUF19_04000)	-	910456..911982 (-)	1527	WP_260998604.1	HAMP domain-containing sensor histidine kinase	-
HUF19_RS04010 (HUF19_04005)	-	912098..913720 (+)	1623	WP_260998605.1	NAD+ synthase	-
HUF19_RS04015 (HUF19_04010)	-	913780..914601 (-)	822	WP_260998606.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49953.32 Da
• Isoelectric Point: 5.0807

>NTDB_id=452704 HUF19_RS04000 WP_260998603.1 909081..910424(-) (pilR) [Thalassolituus hydrocarboniclasticus strain alknpb1M-1]
MNKFAALIIDDEPDIRALIALTLKRMELDCYQAGSVSEALTLLQERPYHFCITDMKLPDGNGLDLIELCNTRHPDMPVAM
ITAYGNMELAVNALKAGAFDVVAKPLDTERLRELVKAALQLTKVPANIENLPSADGLLGQSASMRALKEKIFKVARTQAP
VFIFGESGTGKELVARLIHHQSARMDQPFVAVNCGAIPRDLMETEFFGHTKGSFTGANSEKSGFFRAANGGTLFLDEVAE
LPLDMQAKLLRVIQEKAVRSVGAEFETPVDVRVLCASHKDLGLQVQAEEFRQDLYFRLNVIQINVPRLADRAEDIPLLIR
HFIRKYSQEWGMPEIMLEDSAQQALLSYHYPGNVRELENILQRAVTLAEGDSISLSDLSLSKPIDEEPDDSNPRIETNNL
EAYLENIERRAITQALEATRWNKTAAAEKLGISFRALRYRCKKLEID

Nucleotide

• Length: 1344 bp

>NTDB_id=452704 HUF19_RS04000 WP_260998603.1 909081..910424(-) (pilR) [Thalassolituus hydrocarboniclasticus strain alknpb1M-1]
ATGAATAAATTTGCCGCCCTGATTATTGATGACGAACCCGACATCCGCGCTCTGATTGCGCTGACGCTGAAGCGTATGGA
GCTCGACTGTTATCAGGCAGGAAGCGTGAGCGAAGCACTGACGTTATTGCAGGAGCGTCCCTACCACTTCTGCATCACCG
ATATGAAACTGCCGGATGGTAATGGTCTGGATCTTATTGAACTGTGCAACACCCGCCATCCGGATATGCCAGTCGCCATG
ATTACCGCATACGGCAATATGGAACTGGCCGTAAACGCGCTGAAAGCCGGGGCTTTTGATGTCGTCGCCAAGCCACTGGA
TACCGAGCGCCTCCGTGAACTGGTCAAAGCCGCACTGCAGCTGACCAAAGTGCCGGCCAATATCGAAAACCTGCCTTCTG
CCGACGGCTTGCTGGGCCAGTCAGCCAGCATGCGGGCGCTGAAAGAAAAAATCTTCAAGGTGGCCCGCACTCAGGCACCG
GTCTTTATTTTCGGCGAGTCCGGCACAGGCAAAGAACTGGTTGCCCGCTTAATTCATCATCAGAGTGCGCGCATGGATCA
GCCGTTCGTTGCGGTAAACTGCGGAGCCATTCCGCGGGATCTGATGGAAACCGAATTTTTCGGCCATACCAAAGGCAGCT
TTACCGGCGCCAACAGCGAAAAATCCGGTTTTTTCCGCGCGGCTAATGGCGGCACCCTGTTCCTTGATGAAGTCGCCGAA
CTGCCTCTGGATATGCAGGCCAAACTGCTGCGCGTTATTCAGGAAAAAGCCGTGCGCAGCGTCGGTGCTGAATTTGAAAC
CCCTGTCGATGTGCGCGTTCTTTGTGCCAGTCATAAAGATCTTGGCCTGCAGGTTCAGGCTGAAGAGTTCCGTCAGGACC
TGTATTTCCGCCTGAATGTGATTCAGATAAATGTGCCGCGTCTGGCCGATCGCGCTGAAGATATTCCGCTGCTGATCCGG
CATTTTATCCGCAAATATTCTCAGGAATGGGGGATGCCGGAAATTATGCTGGAAGACAGCGCTCAGCAGGCCTTGCTGAG
CTACCACTACCCGGGGAACGTACGTGAGCTGGAAAATATCCTGCAACGCGCCGTCACCCTAGCCGAAGGTGACAGCATCA
GCCTCAGCGACCTGAGCCTGAGCAAACCCATTGACGAAGAGCCGGACGACAGCAATCCGCGCATTGAAACCAATAACCTC
GAAGCCTACCTTGAGAATATTGAACGCCGCGCGATCACCCAGGCACTGGAAGCCACACGCTGGAACAAAACCGCCGCCGC
CGAAAAACTCGGTATCAGCTTCCGCGCGCTGCGTTACCGCTGTAAAAAACTGGAAATTGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.166	100	0.582
pilR	Acinetobacter baumannii strain A118	47.505	100	0.49
luxO	Vibrio cholerae strain A1552	37.529	97.763	0.367