Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   I6I21_RS10035 Genome accession   NZ_CP065984
Coordinates   1959681..1960679 (+) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_1064     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954681..1965679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I21_RS10020 (I6I21_10020) - 1954927..1956081 (+) 1155 WP_198493815.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6I21_RS10025 (I6I21_10025) - 1956229..1958235 (+) 2007 WP_014570668.1 cell division site-positioning protein MapZ family protein -
  I6I21_RS10030 (I6I21_10030) - 1958378..1959466 (-) 1089 WP_003129448.1 M24 family metallopeptidase -
  I6I21_RS10035 (I6I21_10035) ccpA 1959681..1960679 (+) 999 WP_003129447.1 catabolite control protein A Regulator
  I6I21_RS10040 (I6I21_10040) - 1960817..1961782 (+) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  I6I21_RS10045 (I6I21_10045) - 1961942..1962502 (+) 561 WP_003129445.1 CvpA family protein -
  I6I21_RS10050 (I6I21_10050) mutS/mutS2 1962547..1964877 (+) 2331 WP_003129443.1 endonuclease MutS2 Machinery gene
  I6I21_RS10055 (I6I21_10055) trxA 1964974..1965288 (+) 315 WP_003129442.1 thioredoxin -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=452681 I6I21_RS10035 WP_003129447.1 1959681..1960679(+) (ccpA) [Lactococcus lactis strain FDAARGOS_1064]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=452681 I6I21_RS10035 WP_003129447.1 1959681..1960679(+) (ccpA) [Lactococcus lactis strain FDAARGOS_1064]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569