Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   HSX12_RS17045 Genome accession   NZ_CP054467
Coordinates   3468181..3469344 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain CF57     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3463181..3474344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX12_RS17015 (HSX12_16910) - 3463446..3463865 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  HSX12_RS17020 (HSX12_16915) comFC 3463939..3464628 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  HSX12_RS17025 (HSX12_16920) - 3464634..3464918 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  HSX12_RS17030 (HSX12_16925) comFA 3464976..3466361 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  HSX12_RS17035 (HSX12_16930) - 3466469..3467317 (-) 849 WP_015418336.1 DegV family protein -
  HSX12_RS17040 (HSX12_16935) degU 3467415..3468104 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HSX12_RS17045 (HSX12_16940) degS 3468181..3469344 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HSX12_RS17050 (HSX12_16945) - 3469567..3470214 (+) 648 WP_003151384.1 YigZ family protein -
  HSX12_RS17055 (HSX12_16950) - 3470219..3471433 (+) 1215 WP_015418337.1 LCP family protein -
  HSX12_RS17060 (HSX12_16955) - 3471523..3472599 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  HSX12_RS17065 (HSX12_16960) tuaH 3472732..3473928 (-) 1197 WP_015418338.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=452650 HSX12_RS17045 WP_007407484.1 3468181..3469344(-) (degS) [Bacillus velezensis strain CF57]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=452650 HSX12_RS17045 WP_007407484.1 3468181..3469344(-) (degS) [Bacillus velezensis strain CF57]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951