Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HSX12_RS17020 Genome accession   NZ_CP054467
Coordinates   3463939..3464628 (-) Length   229 a.a.
NCBI ID   WP_197093073.1    Uniprot ID   -
Organism   Bacillus velezensis strain CF57     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458939..3469628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX12_RS16985 (HSX12_16880) fliW 3459030..3459461 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  HSX12_RS16990 (HSX12_16885) - 3459491..3460060 (-) 570 WP_033575224.1 DUF6470 family protein -
  HSX12_RS16995 (HSX12_16890) flgL 3460151..3461068 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  HSX12_RS17000 (HSX12_16895) flgK 3461080..3462597 (-) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  HSX12_RS17005 (HSX12_16900) - 3462613..3463095 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HSX12_RS17010 (HSX12_16905) flgM 3463110..3463376 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HSX12_RS17015 (HSX12_16910) - 3463446..3463865 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  HSX12_RS17020 (HSX12_16915) comFC 3463939..3464628 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  HSX12_RS17025 (HSX12_16920) - 3464634..3464918 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  HSX12_RS17030 (HSX12_16925) comFA 3464976..3466361 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  HSX12_RS17035 (HSX12_16930) - 3466469..3467317 (-) 849 WP_015418336.1 DegV family protein -
  HSX12_RS17040 (HSX12_16935) degU 3467415..3468104 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HSX12_RS17045 (HSX12_16940) degS 3468181..3469344 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25270.84 Da        Isoelectric Point: 8.0838

>NTDB_id=452647 HSX12_RS17020 WP_197093073.1 3463939..3464628(-) (comFC) [Bacillus velezensis strain CF57]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKHFLLRQNRSVY
LYNDAMKDSLARFKFRGDTKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=452647 HSX12_RS17020 WP_197093073.1 3463939..3464628(-) (comFC) [Bacillus velezensis strain CF57]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCGATTTGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCCAAAACGGAAAAGCACTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATACGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598