Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   I6I21_RS03905 Genome accession   NZ_CP065984
Coordinates   797284..798726 (+) Length   480 a.a.
NCBI ID   WP_014570382.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_1064     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 792284..803726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I21_RS03870 (I6I21_03870) - 792488..792679 (+) 192 WP_003131566.1 hypothetical protein -
  I6I21_RS03875 (I6I21_03875) rsmI 792756..793631 (-) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I6I21_RS03880 (I6I21_03880) yabA 793631..793957 (-) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  I6I21_RS03885 (I6I21_03885) yaaT 793950..794732 (-) 783 WP_003131572.1 stage 0 sporulation family protein Regulator
  I6I21_RS03890 (I6I21_03890) - 794784..795644 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  I6I21_RS03895 (I6I21_03895) tmk 795777..796412 (-) 636 WP_003131575.1 dTMP kinase -
  I6I21_RS03900 (I6I21_03900) yycF 796590..797291 (+) 702 WP_003131580.1 response regulator YycF -
  I6I21_RS03905 (I6I21_03905) vicK 797284..798726 (+) 1443 WP_014570382.1 sensor histidine kinase Regulator
  I6I21_RS03910 (I6I21_03910) vicX 798897..799709 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  I6I21_RS03915 (I6I21_03915) groL 799755..801383 (-) 1629 WP_003131585.1 chaperonin GroEL -
  I6I21_RS03920 (I6I21_03920) groES 801471..801755 (-) 285 WP_003131589.1 co-chaperone GroES -
  I6I21_RS03925 (I6I21_03925) - 801875..802264 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  I6I21_RS03930 (I6I21_03930) nox 802354..803694 (-) 1341 WP_014570381.1 H2O-forming NADH oxidase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54693.11 Da        Isoelectric Point: 4.5889

>NTDB_id=452623 I6I21_RS03905 WP_014570382.1 797284..798726(+) (vicK) [Lactococcus lactis strain FDAARGOS_1064]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQINDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIVE
VLKITDQYNFYDLLEKEPEITIETHDSGNESISLHIKFSLFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEDNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=452623 I6I21_RS03905 WP_014570382.1 797284..798726(+) (vicK) [Lactococcus lactis strain FDAARGOS_1064]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATTGGTTATTACTTATTTTCACTCGTCTTTGTTTTAGTCTTTCTCA
ATCAGCAACATCGCATGATTGTGAATGTTTCTAAACAGATAAATGACATAAAAAATGGCTATTTAAATCGCGATAAAATC
CCAAAAGGGACGAGTGAAATCAATGAATTATATGATGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACGCAGAACAA
TCTTGAAAATCAGCGTAATCAATTAGATAGTATTCTCGCATATATGGTTGATGGCGTCATTGCCACCGATCGTCGTGGAA
ATATTATTATGGCCAATAAATCAGCTTTGCACTATTTGAATACAGATAATGATCTCTTGATGCAAAAAAATATTGTTGAA
GTTTTAAAAATTACTGACCAATATAATTTTTATGATTTATTAGAAAAAGAACCTGAAATAACTATTGAGACACATGATTC
TGGGAATGAATCCATTTCGCTCCACATTAAATTTTCCCTCTTTCGTCGTGAATCTGGTTTCATCTCAGGAATTATTGCCG
TCTTACATGATATGACTGAACAAGACAAGGCCGAACGAGAGCGCCGTCTCTTTGTTTCCAATGTTTCTCATGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTAGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAATGCAATTAAGTATTCACCTAAAGGTGGAACTATTA
CAATTTCCGTTGAAAAACGTGAAAGTGATGTTCTAATCTCCATCAGTGACCAAGGAATGGGGATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAATGCTTCAAGAAATTCAAAAGTTGGGGGGACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGTTCTGAAGGAGAAGGAAAAGGAACGACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGATAATGAA
TAA

Domains

Predicted by InterProScan.

PAS domain (PAS_9)

(124-220)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.319

86.875

0.446
  micB Streptococcus pneumoniae Cp1015

47.523

92.5

0.44