Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I6I21_RS03910 Genome accession   NZ_CP065984
Coordinates   798897..799709 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain FDAARGOS_1064     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 793897..804709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I21_RS03885 (I6I21_03885) yaaT 793950..794732 (-) 783 WP_003131572.1 stage 0 sporulation family protein Regulator
  I6I21_RS03890 (I6I21_03890) - 794784..795644 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  I6I21_RS03895 (I6I21_03895) tmk 795777..796412 (-) 636 WP_003131575.1 dTMP kinase -
  I6I21_RS03900 (I6I21_03900) yycF 796590..797291 (+) 702 WP_003131580.1 response regulator YycF -
  I6I21_RS03905 (I6I21_03905) vicK 797284..798726 (+) 1443 WP_014570382.1 sensor histidine kinase Regulator
  I6I21_RS03910 (I6I21_03910) vicX 798897..799709 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  I6I21_RS03915 (I6I21_03915) groL 799755..801383 (-) 1629 WP_003131585.1 chaperonin GroEL -
  I6I21_RS03920 (I6I21_03920) groES 801471..801755 (-) 285 WP_003131589.1 co-chaperone GroES -
  I6I21_RS03925 (I6I21_03925) - 801875..802264 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  I6I21_RS03930 (I6I21_03930) nox 802354..803694 (-) 1341 WP_014570381.1 H2O-forming NADH oxidase -
  I6I21_RS03935 (I6I21_03935) ytpR 803857..804483 (-) 627 WP_003131594.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=452624 I6I21_RS03910 WP_003131583.1 798897..799709(+) (vicX) [Lactococcus lactis strain FDAARGOS_1064]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=452624 I6I21_RS03910 WP_003131583.1 798897..799709(+) (vicX) [Lactococcus lactis strain FDAARGOS_1064]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGGTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685