Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HSZ49_RS12795 Genome accession   NZ_CP054438
Coordinates   2595535..2596047 (-) Length   170 a.a.
NCBI ID   WP_002484307.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2590535..2601047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS12755 (HSZ49_12755) - 2591547..2592302 (-) 756 WP_174544283.1 DUF536 domain-containing protein -
  HSZ49_RS12760 (HSZ49_12760) - 2592760..2592867 (+) 108 Protein_2506 replication protein -
  HSZ49_RS12765 (HSZ49_12765) - 2593422..2593694 (-) 273 WP_037539154.1 hypothetical protein -
  HSZ49_RS12770 (HSZ49_12770) - 2594117..2594332 (+) 216 WP_037539155.1 hypothetical protein -
  HSZ49_RS12775 (HSZ49_12775) - 2594514..2594720 (+) 207 WP_037539156.1 hypothetical protein -
  HSZ49_RS12780 (HSZ49_12780) - 2594745..2594966 (+) 222 WP_011303964.1 hypothetical protein -
  HSZ49_RS12785 (HSZ49_12785) - 2594981..2595121 (+) 141 WP_174544248.1 hypothetical protein -
  HSZ49_RS12790 (HSZ49_12790) rpsR 2595243..2595485 (-) 243 WP_002484306.1 30S ribosomal protein S18 -
  HSZ49_RS12795 (HSZ49_12795) ssbA 2595535..2596047 (-) 513 WP_002484307.1 single-stranded DNA-binding protein Machinery gene
  HSZ49_RS12800 (HSZ49_12800) rpsF 2596066..2596371 (-) 306 WP_002484308.1 30S ribosomal protein S6 -
  HSZ49_RS12805 (HSZ49_12805) - 2596793..2597599 (+) 807 WP_002484309.1 GH25 family lysozyme -
  HSZ49_RS12810 (HSZ49_12810) ychF 2597761..2598858 (-) 1098 WP_002484310.1 redox-regulated ATPase YchF -
  HSZ49_RS12815 (HSZ49_12815) - 2598858..2599073 (-) 216 WP_002484311.1 DUF951 domain-containing protein -
  HSZ49_RS12820 (HSZ49_12820) - 2599102..2599980 (-) 879 WP_037539157.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18948.48 Da        Isoelectric Point: 4.9163

>NTDB_id=452514 HSZ49_RS12795 WP_002484307.1 2595535..2596047(-) (ssbA) [Staphylococcus saprophyticus strain UTI-042y]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=452514 HSZ49_RS12795 WP_002484307.1 2595535..2596047(-) (ssbA) [Staphylococcus saprophyticus strain UTI-042y]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382