Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HSZ49_RS08140 Genome accession   NZ_CP054438
Coordinates   1670327..1671202 (-) Length   291 a.a.
NCBI ID   WP_174543944.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1665327..1676202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS08125 (HSZ49_08125) xerC 1665583..1666473 (-) 891 WP_174543941.1 tyrosine recombinase XerC -
  HSZ49_RS08130 (HSZ49_08130) trmFO 1666592..1667899 (-) 1308 WP_174543942.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HSZ49_RS08135 (HSZ49_08135) topA 1668054..1670120 (-) 2067 WP_174543943.1 type I DNA topoisomerase -
  HSZ49_RS08140 (HSZ49_08140) dprA 1670327..1671202 (-) 876 WP_174543944.1 DNA-processing protein DprA Machinery gene
  HSZ49_RS08145 (HSZ49_08145) sucD 1671510..1672415 (-) 906 WP_002483475.1 succinate--CoA ligase subunit alpha -
  HSZ49_RS08150 (HSZ49_08150) sucC 1672437..1673603 (-) 1167 WP_002483476.1 ADP-forming succinate--CoA ligase subunit beta -
  HSZ49_RS08155 (HSZ49_08155) - 1673711..1674481 (-) 771 WP_037538550.1 ribonuclease HII -
  HSZ49_RS08160 (HSZ49_08160) ylqF 1674488..1675348 (-) 861 WP_069795372.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33778.45 Da        Isoelectric Point: 10.3610

>NTDB_id=452505 HSZ49_RS08140 WP_174543944.1 1670327..1671202(-) (dprA) [Staphylococcus saprophyticus strain UTI-042y]
MNDLDFLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNFEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=452505 HSZ49_RS08140 WP_174543944.1 1670327..1671202(-) (dprA) [Staphylococcus saprophyticus strain UTI-042y]
ATGAACGATTTAGACTTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTTGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGCACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGTGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50

100

0.509
  dprA Staphylococcus aureus N315

50

100

0.509
  dprA Lactococcus lactis subsp. cremoris KW2

38.621

99.656

0.385
  dprA Vibrio campbellii strain DS40M4

36.61

100

0.371