NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	HSZ47_RS12200	Genome accession	NZ_CP054434
Coordinates	2477055..2477567 (-)	Length	170 a.a.
NCBI ID	WP_002484307.1	Uniprot ID	-
Organism	Staphylococcus saprophyticus strain UTI-035
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2472055..2482567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSZ47_RS12150 (HSZ47_12150)	-	2472350..2472964 (-)	615	Protein_2364	FMN-binding negative transcriptional regulator	-
HSZ47_RS12155 (HSZ47_12155)	-	2473005..2473340 (-)	336	WP_011303955.1	hypothetical protein	-
HSZ47_RS12160 (HSZ47_12160)	-	2473445..2473789 (-)	345	WP_174538800.1	DUF4260 domain-containing protein	-
HSZ47_RS12165 (HSZ47_12165)	-	2473994..2474329 (+)	336	WP_174538801.1	DUF4870 domain-containing protein	-
HSZ47_RS12170 (HSZ47_12170)	-	2474384..2474797 (+)	414	WP_011303958.1	YxeA family protein	-
HSZ47_RS12175 (HSZ47_12175)	-	2474941..2475213 (-)	273	WP_048787278.1	hypothetical protein	-
HSZ47_RS13215	-	2475637..2475759 (+)	123	WP_011303961.1	hypothetical protein	-
HSZ47_RS12180 (HSZ47_12180)	-	2476033..2476239 (+)	207	WP_011303963.1	hypothetical protein	-
HSZ47_RS12185 (HSZ47_12185)	-	2476264..2476485 (+)	222	WP_011303964.1	hypothetical protein	-
HSZ47_RS12190 (HSZ47_12190)	-	2476500..2476640 (+)	141	WP_162835602.1	hypothetical protein	-
HSZ47_RS12195 (HSZ47_12195)	rpsR	2476763..2477005 (-)	243	WP_002484306.1	30S ribosomal protein S18	-
HSZ47_RS12200 (HSZ47_12200)	ssbA	2477055..2477567 (-)	513	WP_002484307.1	single-stranded DNA-binding protein	Machinery gene
HSZ47_RS12205 (HSZ47_12205)	rpsF	2477586..2477891 (-)	306	WP_174538802.1	30S ribosomal protein S6	-
HSZ47_RS12210 (HSZ47_12210)	-	2478313..2479119 (+)	807	WP_047505216.1	GH25 family lysozyme	-
HSZ47_RS12215 (HSZ47_12215)	ychF	2479282..2480379 (-)	1098	WP_047505213.1	redox-regulated ATPase YchF	-
HSZ47_RS12220 (HSZ47_12220)	-	2480379..2480594 (-)	216	WP_002484311.1	DUF951 domain-containing protein	-
HSZ47_RS12225 (HSZ47_12225)	-	2480623..2481501 (-)	879	WP_061050402.1	mechanosensitive ion channel family protein	-

Sequence

Protein

Download Length: 170 a.a. Molecular weight: 18948.48 Da Isoelectric Point: 4.9163

                                >NTDB_id=452476 HSZ47_RS12200 WP_002484307.1 2477055..2477567(-) (ssbA) [Staphylococcus saprophyticus strain UTI-035]

MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP

IDISDDDLPF

Nucleotide

Download Length: 513 bp

                                >NTDB_id=452476 HSZ47_RS12200 WP_002484307.1 2477055..2477567(-) (ssbA) [Staphylococcus saprophyticus strain UTI-035]

ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC

GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT

TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT

AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA

TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT

CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA

ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.647
ssb	Latilactobacillus sakei subsp. sakei 23K	57.225	100	0.582
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.091	64.706	0.382

Detailed information NTG0452476