Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HSZ47_RS07865 Genome accession   NZ_CP054434
Coordinates   1612522..1613397 (-) Length   291 a.a.
NCBI ID   WP_174538739.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-035     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1607522..1618397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ47_RS07850 (HSZ47_07850) xerC 1607781..1608671 (-) 891 WP_011303266.1 tyrosine recombinase XerC -
  HSZ47_RS07855 (HSZ47_07855) trmFO 1608790..1610097 (-) 1308 WP_047503612.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HSZ47_RS07860 (HSZ47_07860) topA 1610252..1612318 (-) 2067 WP_011303268.1 type I DNA topoisomerase -
  HSZ47_RS07865 (HSZ47_07865) dprA 1612522..1613397 (-) 876 WP_174538739.1 DNA-processing protein DprA Machinery gene
  HSZ47_RS07870 (HSZ47_07870) sucD 1613704..1614609 (-) 906 WP_011303270.1 succinate--CoA ligase subunit alpha -
  HSZ47_RS07875 (HSZ47_07875) sucC 1614631..1615797 (-) 1167 WP_011303271.1 ADP-forming succinate--CoA ligase subunit beta -
  HSZ47_RS07880 (HSZ47_07880) - 1615905..1616675 (-) 771 WP_047503601.1 ribonuclease HII -
  HSZ47_RS07885 (HSZ47_07885) ylqF 1616682..1617542 (-) 861 WP_047503598.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33679.40 Da        Isoelectric Point: 10.3610

>NTDB_id=452467 HSZ47_RS07865 WP_174538739.1 1612522..1613397(-) (dprA) [Staphylococcus saprophyticus strain UTI-035]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNLEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMPSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=452467 HSZ47_RS07865 WP_174538739.1 1612522..1613397(-) (dprA) [Staphylococcus saprophyticus strain UTI-035]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTAGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCCATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGTACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGGGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

37.288

100

0.378