Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   JBL37_RS22235 Genome accession   NZ_CP065948
Coordinates   4727646..4728170 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PAM68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4722646..4733170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL37_RS22220 (JBL37_22225) aroB 4723762..4724868 (-) 1107 WP_003116138.1 3-dehydroquinate synthase -
  JBL37_RS22225 (JBL37_22230) aroK 4724918..4725436 (-) 519 WP_003095833.1 shikimate kinase AroK -
  JBL37_RS22230 (JBL37_22235) pilQ 4725448..4727592 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  JBL37_RS22235 (JBL37_22240) comL/pilP 4727646..4728170 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JBL37_RS22240 (JBL37_22245) pilO 4728167..4728790 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  JBL37_RS22245 (JBL37_22250) pilN 4728787..4729383 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  JBL37_RS22250 (JBL37_22255) pilM 4729383..4730447 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JBL37_RS22255 (JBL37_22260) - 4730632..4733103 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=452377 JBL37_RS22235 WP_003095836.1 4727646..4728170(-) (comL/pilP) [Pseudomonas aeruginosa strain PAM68]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=452377 JBL37_RS22235 WP_003095836.1 4727646..4728170(-) (comL/pilP) [Pseudomonas aeruginosa strain PAM68]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362