Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HTY60_RS12575 Genome accession   NZ_CP054415
Coordinates   2445036..2445371 (+) Length   111 a.a.
NCBI ID   WP_014470659.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 205     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2440036..2450371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS12555 (HTY60_12555) gcvT 2440640..2441740 (-) 1101 WP_013352857.1 glycine cleavage system aminomethyltransferase GcvT -
  HTY60_RS12560 (HTY60_12560) - 2442164..2443834 (+) 1671 WP_014470658.1 DEAD/DEAH box helicase -
  HTY60_RS12565 (HTY60_12565) - 2443855..2444649 (+) 795 WP_013352859.1 YqhG family protein -
  HTY60_RS12570 (HTY60_12570) sinI 2444829..2445002 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  HTY60_RS12575 (HTY60_12575) sinR 2445036..2445371 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  HTY60_RS12580 (HTY60_12580) tasA 2445419..2446204 (-) 786 WP_013352862.1 biofilm matrix protein TasA -
  HTY60_RS12585 (HTY60_12585) sipW 2446269..2446853 (-) 585 WP_013352863.1 signal peptidase I SipW -
  HTY60_RS12590 (HTY60_12590) tapA 2446825..2447496 (-) 672 WP_013352864.1 amyloid fiber anchoring/assembly protein TapA -
  HTY60_RS12595 (HTY60_12595) - 2447754..2448083 (+) 330 WP_013352865.1 DUF3889 domain-containing protein -
  HTY60_RS12600 (HTY60_12600) - 2448124..2448303 (-) 180 WP_013352866.1 YqzE family protein -
  HTY60_RS12605 (HTY60_12605) comGG 2448357..2448734 (-) 378 WP_013352867.1 competence type IV pilus minor pilin ComGG Machinery gene
  HTY60_RS12610 (HTY60_12610) comGF 2448736..2449236 (-) 501 WP_013352868.1 competence type IV pilus minor pilin ComGF -
  HTY60_RS12615 (HTY60_12615) comGE 2449145..2449459 (-) 315 WP_014470662.1 competence type IV pilus minor pilin ComGE Machinery gene
  HTY60_RS12620 (HTY60_12620) comGD 2449443..2449880 (-) 438 WP_013352869.1 competence type IV pilus minor pilin ComGD Machinery gene
  HTY60_RS12625 (HTY60_12625) comGC 2449870..2450178 (-) 309 WP_013352870.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12986.67 Da        Isoelectric Point: 7.2026

>NTDB_id=452314 HTY60_RS12575 WP_014470659.1 2445036..2445371(+) (sinR) [Bacillus amyloliquefaciens strain 205]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLEYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=452314 HTY60_RS12575 WP_014470659.1 2445036..2445371(+) (sinR) [Bacillus amyloliquefaciens strain 205]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACATTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGAATATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982