Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HTZ78_RS12150 Genome accession   NZ_CP054306
Coordinates   2589828..2592173 (-) Length   781 a.a.
NCBI ID   WP_249213872.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2584828..2597173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS12125 (HTZ78_12120) ndhC 2585324..2585686 (-) 363 WP_190596439.1 photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C -
  HTZ78_RS12130 (HTZ78_12125) thrC 2585971..2587119 (+) 1149 WP_212716353.1 threonine synthase -
  HTZ78_RS12135 (HTZ78_12130) tilS 2587152..2588138 (-) 987 WP_212716355.1 tRNA lysidine(34) synthetase TilS -
  HTZ78_RS12140 (HTZ78_12135) - 2588173..2588925 (+) 753 WP_212716358.1 FkbM family methyltransferase -
  HTZ78_RS12145 (HTZ78_12140) - 2588945..2589769 (+) 825 WP_212716360.1 FkbM family methyltransferase -
  HTZ78_RS12150 (HTZ78_12145) pilQ 2589828..2592173 (-) 2346 WP_249213872.1 type IV pilus secretin PilQ Machinery gene
  HTZ78_RS12155 (HTZ78_12150) pilO 2592269..2593078 (-) 810 WP_212716363.1 pilus assembly protein Machinery gene
  HTZ78_RS12160 (HTZ78_12155) pilN 2593126..2593974 (-) 849 WP_212716365.1 PilN domain-containing protein Machinery gene
  HTZ78_RS12165 (HTZ78_12160) pilM 2594058..2595161 (-) 1104 WP_194013674.1 type IV pilus biogenesis protein PilM Machinery gene
  HTZ78_RS12170 (HTZ78_12165) - 2595347..2595787 (-) 441 WP_194013672.1 hypothetical protein -
  HTZ78_RS12175 (HTZ78_12170) - 2595817..2596581 (-) 765 WP_212716367.1 iron uptake porin -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 84239.44 Da        Isoelectric Point: 4.3402

>NTDB_id=451977 HTZ78_RS12150 WP_249213872.1 2589828..2592173(-) (pilQ) [Synechocystis sp. PCC 7338]
MKNFRFWLTTEMVACCLLAMAPAQAETLPQSDTFGANLETAIASDLSRDWLKFDKILEQSLKQKEDIDSWSPSLELTQTK
SLVKPEQKLTNIELLIQELEALSDPLALNFPEPNQTSVAQMAPSSRPMPPPPAGSGQVMFPNPEIIIQQQGGAPQGGARV
GNPNILSPAVPVAPVRSRAVPPPVGDLAISNINASFDMIDLGQRGQVNVPSLVLREAPAREVLAVLTRYAGMNLIFTDNQ
SNEGTPTPGTPPGGQDAPPPNQSTITLDIQNESVQDVFNYVLMASGLKASRRGNTIFAGASLLPSARNIITRTIRLNQAS
AESVASTLASQGAEVNILFEGQEDVQLAENAPPRVIKQPPTLVPLTVQKPANDSSVLILEGLVVSTDPRLNTVTLVGEPR
NVELASSMITQMDARRRQVAVNVKIIDINLNNIQDYDSSFSFGIGDSFFVQDSGRGIMRFGDTAPVQEIDINNPLGRVTN
PPAIVNPFFNGPGEDVFFDLSRLTNIETPLGTGTIPLNFFTSGSGAISNNPLFTGVTDFPIAEVDQDGILTVTYPEFGLP
SFYQYPKKFQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGNTAVRTITPVLEDVGLTLNVIV
DRIDDNGFITLRVNPIVASPAGTERFDSGAGAINEITLINKRELTSGVVRLRDDQTFILSGIISELQRSTTSKVPILGDL
PVIGALFRQSTDTTDRSEVIILMTPKIIHDSTEAQFGFRYNPDAATAEFLRQKGFPVQAQP

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=451977 HTZ78_RS12150 WP_249213872.1 2589828..2592173(-) (pilQ) [Synechocystis sp. PCC 7338]
GTGAAAAATTTTCGGTTTTGGTTAACGACGGAAATGGTAGCCTGCTGTTTACTGGCTATGGCCCCTGCCCAGGCGGAAAC
TCTGCCCCAGTCGGACACATTTGGCGCAAATCTAGAAACGGCGATCGCCAGTGACTTGAGTCGAGATTGGCTAAAATTTG
ACAAAATTCTGGAGCAATCCCTCAAGCAAAAAGAGGATATTGATTCTTGGTCACCATCATTGGAGTTGACCCAGACCAAA
TCTCTTGTCAAGCCAGAGCAAAAGTTAACGAATATTGAGCTGCTAATACAGGAATTGGAAGCTCTATCCGATCCTTTAGC
CTTGAACTTTCCAGAACCTAACCAGACCAGTGTTGCTCAAATGGCTCCCTCCAGCCGTCCTATGCCCCCCCCTCCAGCGG
GCAGTGGACAAGTCATGTTTCCCAACCCGGAAATTATTATTCAACAACAGGGTGGTGCTCCCCAGGGAGGAGCGAGGGTA
GGTAATCCCAATATTTTGTCCCCCGCTGTGCCAGTGGCTCCCGTCCGTTCCAGGGCAGTGCCACCACCGGTGGGGGATTT
GGCTATTTCCAATATCAACGCTTCCTTCGACATGATTGATCTTGGTCAAAGGGGCCAGGTTAACGTGCCAAGTTTAGTGC
TAAGGGAAGCCCCCGCCAGGGAAGTGCTGGCAGTGTTGACTCGTTATGCCGGCATGAACTTGATTTTCACTGATAATCAA
AGCAATGAAGGGACTCCCACTCCCGGCACTCCTCCCGGTGGACAGGATGCTCCTCCGCCCAATCAGTCAACTATCACCTT
AGATATTCAAAATGAGAGCGTTCAGGATGTCTTTAACTATGTTCTGATGGCATCGGGGCTAAAGGCCAGTCGTCGGGGTA
ATACCATTTTCGCGGGTGCTAGTCTACTGCCTTCTGCCCGGAATATTATCACCCGCACCATCCGATTGAACCAGGCTAGC
GCTGAATCCGTAGCTAGTACTTTAGCTTCCCAAGGGGCTGAAGTAAATATTCTCTTTGAAGGCCAAGAAGATGTTCAACT
CGCGGAGAACGCTCCACCAAGAGTAATCAAACAGCCCCCCACCCTAGTCCCTTTAACTGTTCAAAAACCAGCCAACGATT
CTTCAGTTTTAATTCTGGAAGGATTAGTAGTTAGTACAGACCCCCGTTTAAATACAGTAACTTTGGTGGGTGAACCCCGT
AATGTGGAATTGGCTAGCTCCATGATCACGCAGATGGATGCTCGCCGTCGTCAAGTAGCAGTTAACGTCAAGATTATTGA
CATCAACCTTAATAATATTCAGGATTATGACAGTAGCTTTTCCTTTGGTATAGGGGATAGTTTCTTTGTTCAAGACAGCG
GTAGGGGGATAATGCGTTTTGGTGATACTGCTCCGGTTCAGGAAATTGACATTAACAATCCGTTAGGGCGAGTTACTAAT
CCCCCTGCCATCGTCAATCCATTTTTTAATGGTCCCGGTGAAGATGTTTTCTTTGACCTTAGTAGACTAACCAATATTGA
AACTCCCCTTGGTACAGGGACAATTCCCCTTAATTTCTTCACATCAGGATCGGGAGCTATTTCCAATAATCCACTATTCA
CTGGGGTTACCGACTTTCCAATTGCGGAGGTTGATCAAGATGGCATTTTAACAGTTACTTATCCCGAGTTTGGTCTGCCA
TCTTTCTATCAGTATCCGAAGAAATTCCAGGCACAAATTGATGCCCAGATACGCAGTGGTAATGCCAAGATCCTCACTGA
TCCAACTCTGATTGTTCAGGAAGGGGAAGCGGCCCAAGTTAAACTAACGGAATCCGTCATTGCTAGTGTCGATACCCAGG
TTGATACCCAAGGAAACACCGCCGTCAGGACCATTACGCCAGTTTTGGAAGATGTTGGGCTAACGCTAAATGTCATCGTT
GACCGAATTGATGACAATGGCTTTATTACGTTGCGGGTTAATCCAATAGTTGCATCTCCGGCTGGCACAGAAAGATTTGA
TAGTGGTGCTGGCGCCATCAACGAAATCACACTAATAAACAAAAGGGAACTTACTTCCGGTGTAGTTCGGCTGAGGGATG
ATCAGACATTCATTCTATCTGGCATTATTTCGGAACTTCAACGTTCTACCACAAGTAAAGTTCCAATTCTGGGAGATTTA
CCGGTGATTGGGGCATTGTTTCGGCAGTCCACAGACACCACGGACCGTTCGGAGGTTATTATTCTCATGACTCCCAAAAT
TATTCATGACAGTACGGAAGCTCAATTTGGTTTCCGCTATAATCCCGATGCGGCGACAGCGGAATTTTTGCGACAGAAAG
GATTCCCGGTTCAAGCTCAACCGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(577-749)

Bacterial type II/III secretion system short domain (Secretin_N)

(311-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Synechocystis sp. PCC 6803

91.826

100

0.921