Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HTZ78_RS12165 Genome accession   NZ_CP054306
Coordinates   2594058..2595161 (-) Length   367 a.a.
NCBI ID   WP_194013674.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2589058..2600161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS12150 (HTZ78_12145) pilQ 2589828..2592173 (-) 2346 WP_249213872.1 type IV pilus secretin PilQ Machinery gene
  HTZ78_RS12155 (HTZ78_12150) pilO 2592269..2593078 (-) 810 WP_212716363.1 pilus assembly protein Machinery gene
  HTZ78_RS12160 (HTZ78_12155) pilN 2593126..2593974 (-) 849 WP_212716365.1 PilN domain-containing protein Machinery gene
  HTZ78_RS12165 (HTZ78_12160) pilM 2594058..2595161 (-) 1104 WP_194013674.1 type IV pilus biogenesis protein PilM Machinery gene
  HTZ78_RS12170 (HTZ78_12165) - 2595347..2595787 (-) 441 WP_194013672.1 hypothetical protein -
  HTZ78_RS12175 (HTZ78_12170) - 2595817..2596581 (-) 765 WP_212716367.1 iron uptake porin -
  HTZ78_RS12180 (HTZ78_12175) - 2596832..2597572 (-) 741 WP_212716369.1 WecB/TagA/CpsF family glycosyltransferase -
  HTZ78_RS12185 (HTZ78_12180) - 2597704..2599293 (-) 1590 WP_194013668.1 TolC family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40928.62 Da        Isoelectric Point: 4.2649

>NTDB_id=451980 HTZ78_RS12165 WP_194013674.1 2594058..2595161(-) (pilM) [Synechocystis sp. PCC 7338]
MFSRLTSLFSRKSSGVGLEITPERVNVAQLTSQGQSYKLRKFGHASIPEGIFEEGKIVDSPALAEIIQELLSEHSINTKQ
VATAVPMREAIIRMLPVPAELDENELRDMVLNHEAALYLPYPREEVDLDYQKLGLFEDEDGIEKVQVLLVATRREVTDSY
LDTFQQAGLQVDVLEINSFALIRTIREQLRQFGSREAAVLVDIEFDSTEIAIIVDGVPQFSRTVPIGTYQMQNALSRAMN
LPPSRNPEILQGMTIPVTQFDTMSTQGTAVNPGMNALMRVMGELTDELRRSINFYLNQSEELELVQLLLAGPGGGLIQLD
EYFTQRLSIPTVRVDPFEALAIDTDQNFSDVERPSLATVLGLGIREA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=451980 HTZ78_RS12165 WP_194013674.1 2594058..2595161(-) (pilM) [Synechocystis sp. PCC 7338]
ATGTTTAGCCGTCTCACTAGCTTATTTAGCCGTAAATCCTCCGGGGTAGGGCTAGAAATCACCCCCGAAAGGGTTAATGT
TGCCCAACTTACTTCCCAGGGTCAGAGCTATAAACTGAGGAAGTTTGGTCACGCTTCCATTCCGGAGGGGATTTTTGAGG
AAGGGAAGATCGTTGATTCTCCAGCCTTGGCGGAAATTATTCAGGAACTGCTGAGCGAGCATAGTATTAACACCAAGCAG
GTGGCCACGGCGGTGCCCATGCGGGAGGCTATCATTCGTATGCTGCCGGTGCCGGCGGAGTTGGACGAAAACGAGTTGCG
GGACATGGTGCTGAACCACGAAGCGGCCCTGTATTTGCCCTACCCCCGGGAAGAAGTGGATTTGGATTACCAAAAACTAG
GCTTGTTCGAGGATGAAGACGGCATCGAAAAGGTGCAGGTGTTGTTGGTGGCCACCCGTCGGGAGGTGACCGATTCCTAT
CTAGATACTTTTCAGCAGGCGGGGCTCCAGGTGGACGTGCTGGAAATCAATAGTTTTGCCCTAATTAGAACCATTCGGGA
ACAGTTGCGGCAGTTTGGTTCTCGGGAGGCGGCGGTTTTGGTGGATATTGAGTTCGACAGCACGGAAATTGCCATCATTG
TGGACGGAGTGCCCCAGTTTTCTCGCACAGTCCCCATTGGCACTTACCAGATGCAGAATGCCCTTTCCCGGGCGATGAAT
TTGCCTCCTTCCCGCAACCCAGAAATTTTGCAGGGCATGACCATTCCCGTCACCCAGTTCGACACCATGAGCACCCAGGG
CACAGCGGTTAATCCCGGCATGAATGCCCTAATGCGGGTCATGGGTGAACTAACCGACGAGCTGCGGCGGTCTATCAATT
TCTACCTCAACCAGAGTGAAGAATTGGAATTGGTGCAGTTACTCTTGGCCGGCCCCGGTGGTGGTCTGATCCAATTGGAT
GAATATTTCACCCAACGCTTAAGTATTCCCACCGTCAGGGTCGACCCCTTTGAAGCTCTGGCGATCGACACTGATCAGAA
CTTTTCTGACGTAGAGCGTCCCAGTCTGGCCACGGTTTTGGGTTTGGGTATCCGGGAAGCCTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-241)

Type IV pilus assembly protein PilM; (PilM_2)

(282-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

98.093

100

0.981