Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HTZ78_RS12160 Genome accession   NZ_CP054306
Coordinates   2593126..2593974 (-) Length   282 a.a.
NCBI ID   WP_212716365.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2588126..2598974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS12140 (HTZ78_12135) - 2588173..2588925 (+) 753 WP_212716358.1 FkbM family methyltransferase -
  HTZ78_RS12145 (HTZ78_12140) - 2588945..2589769 (+) 825 WP_212716360.1 FkbM family methyltransferase -
  HTZ78_RS12150 (HTZ78_12145) pilQ 2589828..2592173 (-) 2346 WP_249213872.1 type IV pilus secretin PilQ Machinery gene
  HTZ78_RS12155 (HTZ78_12150) pilO 2592269..2593078 (-) 810 WP_212716363.1 pilus assembly protein Machinery gene
  HTZ78_RS12160 (HTZ78_12155) pilN 2593126..2593974 (-) 849 WP_212716365.1 PilN domain-containing protein Machinery gene
  HTZ78_RS12165 (HTZ78_12160) pilM 2594058..2595161 (-) 1104 WP_194013674.1 type IV pilus biogenesis protein PilM Machinery gene
  HTZ78_RS12170 (HTZ78_12165) - 2595347..2595787 (-) 441 WP_194013672.1 hypothetical protein -
  HTZ78_RS12175 (HTZ78_12170) - 2595817..2596581 (-) 765 WP_212716367.1 iron uptake porin -
  HTZ78_RS12180 (HTZ78_12175) - 2596832..2597572 (-) 741 WP_212716369.1 WecB/TagA/CpsF family glycosyltransferase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 30104.12 Da        Isoelectric Point: 4.1313

>NTDB_id=451979 HTZ78_RS12160 WP_212716365.1 2593126..2593974(-) (pilN) [Synechocystis sp. PCC 7338]
MYSLDVNFLKDRNSDVVRSTQTTSITLAGDDLQKQMPLYIGAGVMVLLPALAGLGVLLINWQKGVAQTNIQQLETELTQL
QGEQQKIQEVQAKTAAAHQDADGLIAVFNQIKPWSALLQEITNQLPQEVQLQSIQQEGNLVTLSGFAGNYGALNDFLLTL
QSSKFLQANKTQLMTANAAALPITGEGTTAQTGGTEELEADQGTSTVLIPAGVSYTIQTEITNTPDKDLMTALIKNGAAG
LVARFKFLELKGVLDRPADVPDVPPPPIVEPTGDAPPPETSN

Nucleotide


Download         Length: 849 bp        

>NTDB_id=451979 HTZ78_RS12160 WP_212716365.1 2593126..2593974(-) (pilN) [Synechocystis sp. PCC 7338]
ATGTATAGCCTAGACGTCAACTTTCTCAAGGACCGCAACTCTGACGTTGTTCGGTCCACCCAAACCACCAGCATTACCCT
AGCGGGAGACGATCTACAGAAACAAATGCCGCTTTACATTGGGGCGGGGGTGATGGTACTCTTGCCTGCTTTGGCTGGGT
TGGGGGTGCTGCTGATCAATTGGCAAAAGGGCGTTGCCCAGACCAATATTCAACAGTTAGAAACGGAGTTGACCCAACTA
CAGGGGGAACAGCAAAAAATCCAGGAAGTGCAAGCAAAAACAGCGGCGGCTCACCAGGATGCGGACGGCTTAATCGCTGT
GTTTAATCAAATTAAGCCTTGGTCGGCTTTATTGCAGGAAATTACTAATCAGTTACCCCAGGAAGTACAGTTACAAAGTA
TCCAACAGGAAGGAAACTTGGTTACCCTGTCCGGATTTGCCGGGAACTACGGTGCTCTAAATGATTTCCTCCTCACTTTG
CAGAGTTCAAAGTTTTTACAGGCTAATAAAACTCAGTTAATGACGGCCAATGCGGCAGCTTTACCCATTACTGGGGAAGG
CACAACAGCCCAAACTGGTGGAACAGAGGAACTAGAAGCGGATCAGGGCACTTCTACGGTTTTAATTCCAGCGGGGGTGA
GCTACACCATCCAGACTGAGATCACTAATACCCCAGATAAGGATCTGATGACAGCATTAATTAAAAATGGGGCGGCGGGT
TTAGTGGCCCGATTTAAATTTTTAGAACTCAAGGGGGTATTGGATCGGCCAGCGGATGTACCGGATGTTCCCCCTCCCCC
GATTGTGGAACCAACAGGGGATGCTCCTCCACCAGAGACCTCAAACTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(116-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Synechocystis sp. PCC 6803

87.726

98.227

0.862