Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I1A60_RS08360 Genome accession   NZ_CP065857
Coordinates   1727894..1728496 (-) Length   200 a.a.
NCBI ID   WP_151359687.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1153-MRSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1722894..1733496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A60_RS08340 (I1A60_08340) yajC 1724390..1724650 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  I1A60_RS08345 (I1A60_08345) tgt 1724669..1725808 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  I1A60_RS08350 (I1A60_08350) queA 1725831..1726856 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  I1A60_RS08355 (I1A60_08355) ruvB 1726858..1727862 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I1A60_RS08360 (I1A60_08360) ruvA 1727894..1728496 (-) 603 WP_151359687.1 Holliday junction branch migration protein RuvA Machinery gene
  I1A60_RS08365 (I1A60_08365) - 1728510..1728965 (-) 456 WP_000368902.1 ACT domain-containing protein -
  I1A60_RS08370 (I1A60_08370) obgE 1728978..1730270 (-) 1293 WP_000496100.1 GTPase ObgE -
  I1A60_RS08375 (I1A60_08375) rpmA 1730887..1731171 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  I1A60_RS08380 (I1A60_08380) - 1731183..1731503 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  I1A60_RS08385 (I1A60_08385) rplU 1731509..1731817 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  I1A60_RS08390 (I1A60_08390) mreD 1732110..1732640 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  I1A60_RS08395 (I1A60_08395) mreC 1732640..1733482 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22252.51 Da        Isoelectric Point: 6.4993

>NTDB_id=451652 I1A60_RS08360 WP_151359687.1 1727894..1728496(-) (ruvA) [Staphylococcus aureus strain CC1153-MRSA]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNKVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=451652 I1A60_RS08360 WP_151359687.1 1727894..1728496(-) (ruvA) [Staphylococcus aureus strain CC1153-MRSA]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATAAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425