Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HRH33_RS16485 Genome accession   NZ_CP054205
Coordinates   3658118..3660343 (-) Length   741 a.a.
NCBI ID   WP_167417854.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain NL2019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653118..3665343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRH33_RS16450 (HRH33_16450) murB 3653498..3654517 (-) 1020 WP_167417850.1 UDP-N-acetylmuramate dehydrogenase -
  HRH33_RS16455 (HRH33_16455) - 3654514..3654978 (-) 465 WP_167417851.1 low molecular weight protein-tyrosine-phosphatase -
  HRH33_RS16460 (HRH33_16460) kdsB 3654978..3655742 (-) 765 WP_167417852.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HRH33_RS16465 (HRH33_16465) - 3655739..3655924 (-) 186 WP_011060103.1 Trm112 family protein -
  HRH33_RS16470 (HRH33_16470) lpxK 3655948..3656958 (-) 1011 WP_167417853.1 tetraacyldisaccharide 4'-kinase -
  HRH33_RS16475 (HRH33_16475) - 3656958..3657386 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  HRH33_RS16480 (HRH33_16480) exbB 3657383..3658018 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HRH33_RS16485 (HRH33_16485) comA 3658118..3660343 (-) 2226 WP_167417854.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HRH33_RS16490 (HRH33_16490) - 3660478..3660993 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  HRH33_RS16495 (HRH33_16495) - 3660997..3662367 (-) 1371 WP_167417855.1 sensor histidine kinase -
  HRH33_RS16500 (HRH33_16500) - 3662354..3663070 (-) 717 WP_167417856.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80193.14 Da        Isoelectric Point: 10.9252

>NTDB_id=451432 HRH33_RS16485 WP_167417854.1 3658118..3660343(-) (comA) [Pseudomonas rhodesiae strain NL2019]
MKTGMFALASGLLALVFLPALPATGWLIAMLVLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLAQRIGATG
SVKDGERLAPARNAWRDGLRQRLLAVDAQGREAGLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGVWPRGWPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLGLGLPISMSAPLANLVAVPWISLVVLPLAL
LGTALLAVPFVGEGLLWLAGGALQGLFVGLGWLAGYAPAWVPAQVPLAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPRESVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRSGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AAVARGMPIRRVVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAISGNAKSCVLQVQANGERLLLTGDIDRDAE
RALLKSSLAVPTDWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRVQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=451432 HRH33_RS16485 WP_167417854.1 3658118..3660343(-) (comA) [Pseudomonas rhodesiae strain NL2019]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGTTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCAACGGGCTGGCT
GATCGCCATGCTGGTGCTGGCGTTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGC
TGGGTGGCCGGGTTACCGCAACAGACCGACGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGCTGGCCCAGCGCATCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGCCCCGGCGCGCAATGCGTGGCGCGATGGCCTGCGTCAACGGCTGCTGGCCGTGGA
TGCCCAAGGCCGCGAGGCGGGCCTGGCCGCTTTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTACATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATCTATGGCCTG
GTTGCCGGGTTGGCCCGTTACGGAGTTTGGCCGCGAGGTTGGCCATGGCTGCCTTGGGCGTGCGGCCTGGCCTTTGCCGC
TGCACTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTGATGGTGGGGTTGGTGCTGCTCT
GGCGTTTGCGCTTTCGCCATCTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAATGGGGTGCTGATCCTGGAACCCCTG
GCCAGTCTGCAGGCGGGTTTCTGGCTATCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGCTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGTCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTGTTGTTGGGGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCACTGGCGCTG
CTGGGCACCGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGTTGCAGGGGTTATT
CGTCGGCTTGGGCTGGCTCGCCGGGTACGCGCCCGCTTGGGTACCGGCGCAGGTGCCCTTGGCTGCCTGGCTGATCAGCC
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGTTGCGCCTGCTGGGTTGGCCGATGTTGCTGCTGGCGGTG
TTCCCTCCTCGAGAATCGGTGCCCTATGGGCAGGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGCTCGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCAGTGGCCCGAGGCATGCCGATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATCAGTGGCA
ACGCCAAATCCTGTGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CGGGCGCTGCTCAAGTCGTCGCTGGCGGTGCCCACCGACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCCTGCAACGGCTGGCGCCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGTCGGGTCTATGACAGCGCCGAACAAGGCGCCGTACGCGTGCAATTA
GGGGCCTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.166

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.427

100

0.381