Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HRH33_RS16480 Genome accession   NZ_CP054205
Coordinates   3657383..3658018 (-) Length   211 a.a.
NCBI ID   WP_034098613.1    Uniprot ID   A0A2G0X9Z2
Organism   Pseudomonas rhodesiae strain NL2019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652383..3663018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRH33_RS16445 (HRH33_16445) - 3652764..3653435 (+) 672 WP_034098601.1 Bax inhibitor-1/YccA family protein -
  HRH33_RS16450 (HRH33_16450) murB 3653498..3654517 (-) 1020 WP_167417850.1 UDP-N-acetylmuramate dehydrogenase -
  HRH33_RS16455 (HRH33_16455) - 3654514..3654978 (-) 465 WP_167417851.1 low molecular weight protein-tyrosine-phosphatase -
  HRH33_RS16460 (HRH33_16460) kdsB 3654978..3655742 (-) 765 WP_167417852.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HRH33_RS16465 (HRH33_16465) - 3655739..3655924 (-) 186 WP_011060103.1 Trm112 family protein -
  HRH33_RS16470 (HRH33_16470) lpxK 3655948..3656958 (-) 1011 WP_167417853.1 tetraacyldisaccharide 4'-kinase -
  HRH33_RS16475 (HRH33_16475) - 3656958..3657386 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  HRH33_RS16480 (HRH33_16480) exbB 3657383..3658018 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HRH33_RS16485 (HRH33_16485) comA 3658118..3660343 (-) 2226 WP_167417854.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HRH33_RS16490 (HRH33_16490) - 3660478..3660993 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  HRH33_RS16495 (HRH33_16495) - 3660997..3662367 (-) 1371 WP_167417855.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.95 Da        Isoelectric Point: 6.8765

>NTDB_id=451431 HRH33_RS16480 WP_034098613.1 3657383..3658018(-) (exbB) [Pseudomonas rhodesiae strain NL2019]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=451431 HRH33_RS16480 WP_034098613.1 3657383..3658018(-) (exbB) [Pseudomonas rhodesiae strain NL2019]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCGCTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGTGCTAGTCGTGTCACCCCTGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAACTGGACAAGGAAAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACCGGCATGAGCGCTAACGCGGCCGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATTACCACGGCG
GCGGGCTTGATGGTGGGGATTCCATCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGATCGCGACGTGGATCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0X9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853