Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   HR084_RS17910 Genome accession   NZ_CP054177
Coordinates   3514912..3516069 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain JCL16     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3509912..3521069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS17880 (HR084_17880) yvyF 3510165..3510584 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  HR084_RS17885 (HR084_17885) comFC 3510658..3511380 (-) 723 WP_173614334.1 comF operon protein ComFC Machinery gene
  HR084_RS17890 (HR084_17890) comFB 3511344..3511640 (-) 297 WP_015483764.1 late competence protein ComFB -
  HR084_RS17895 (HR084_17895) comFA 3511700..3513091 (-) 1392 WP_173614335.1 ATP-dependent helicase ComFA Machinery gene
  HR084_RS17900 (HR084_17900) fakBA 3513197..3514042 (-) 846 WP_003244125.1 DegV family protein -
  HR084_RS17905 (HR084_17905) degU 3514140..3514829 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HR084_RS17910 (HR084_17910) degS 3514912..3516069 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  HR084_RS17915 (HR084_17915) yvyE 3516286..3516939 (+) 654 WP_003227979.1 YigZ family protein -
  HR084_RS17920 (HR084_17920) tagV 3516939..3518105 (+) 1167 WP_173614336.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  HR084_RS17925 (HR084_17925) tagO 3518177..3519253 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  HR084_RS17930 (HR084_17930) tuaH 3519398..3520591 (-) 1194 WP_080287643.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=451360 HR084_RS17910 WP_003227983.1 3514912..3516069(-) (degS) [Bacillus subtilis strain JCL16]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=451360 HR084_RS17910 WP_003227983.1 3514912..3516069(-) (degS) [Bacillus subtilis strain JCL16]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1