Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HR084_RS17885 Genome accession   NZ_CP054177
Coordinates   3510658..3511380 (-) Length   240 a.a.
NCBI ID   WP_173614334.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505658..3516380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS17850 (HR084_17850) fliW 3505797..3506228 (-) 432 WP_071577299.1 flagellar assembly protein FliW -
  HR084_RS17855 (HR084_17855) yviE 3506249..3506824 (-) 576 WP_014481045.1 DUF6470 family protein -
  HR084_RS17860 (HR084_17860) flgL 3506871..3507767 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  HR084_RS17865 (HR084_17865) flgK 3507778..3509301 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  HR084_RS17870 (HR084_17870) flgN 3509320..3509802 (-) 483 WP_014481048.1 flagellar protein FlgN -
  HR084_RS17875 (HR084_17875) flgM 3509818..3510084 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  HR084_RS17880 (HR084_17880) yvyF 3510165..3510584 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  HR084_RS17885 (HR084_17885) comFC 3510658..3511380 (-) 723 WP_173614334.1 comF operon protein ComFC Machinery gene
  HR084_RS17890 (HR084_17890) comFB 3511344..3511640 (-) 297 WP_015483764.1 late competence protein ComFB -
  HR084_RS17895 (HR084_17895) comFA 3511700..3513091 (-) 1392 WP_173614335.1 ATP-dependent helicase ComFA Machinery gene
  HR084_RS17900 (HR084_17900) fakBA 3513197..3514042 (-) 846 WP_003244125.1 DegV family protein -
  HR084_RS17905 (HR084_17905) degU 3514140..3514829 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HR084_RS17910 (HR084_17910) degS 3514912..3516069 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27491.72 Da        Isoelectric Point: 9.3211

>NTDB_id=451357 HR084_RS17885 WP_173614334.1 3510658..3511380(-) (comFC) [Bacillus subtilis strain JCL16]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEEWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSRVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=451357 HR084_RS17885 WP_173614334.1 3510658..3511380(-) (comFC) [Bacillus subtilis strain JCL16]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGAGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAGGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATTATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.5

100

0.975