Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HR084_RS17895 Genome accession   NZ_CP054177
Coordinates   3511700..3513091 (-) Length   463 a.a.
NCBI ID   WP_173614335.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506700..3518091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS17860 (HR084_17860) flgL 3506871..3507767 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  HR084_RS17865 (HR084_17865) flgK 3507778..3509301 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  HR084_RS17870 (HR084_17870) flgN 3509320..3509802 (-) 483 WP_014481048.1 flagellar protein FlgN -
  HR084_RS17875 (HR084_17875) flgM 3509818..3510084 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  HR084_RS17880 (HR084_17880) yvyF 3510165..3510584 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  HR084_RS17885 (HR084_17885) comFC 3510658..3511380 (-) 723 WP_173614334.1 comF operon protein ComFC Machinery gene
  HR084_RS17890 (HR084_17890) comFB 3511344..3511640 (-) 297 WP_015483764.1 late competence protein ComFB -
  HR084_RS17895 (HR084_17895) comFA 3511700..3513091 (-) 1392 WP_173614335.1 ATP-dependent helicase ComFA Machinery gene
  HR084_RS17900 (HR084_17900) fakBA 3513197..3514042 (-) 846 WP_003244125.1 DegV family protein -
  HR084_RS17905 (HR084_17905) degU 3514140..3514829 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HR084_RS17910 (HR084_17910) degS 3514912..3516069 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  HR084_RS17915 (HR084_17915) yvyE 3516286..3516939 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52618.60 Da        Isoelectric Point: 9.8572

>NTDB_id=451358 HR084_RS17895 WP_173614335.1 3511700..3513091(-) (comFA) [Bacillus subtilis strain JCL16]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRTVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=451358 HR084_RS17895 WP_173614335.1 3511700..3513091(-) (comFA) [Bacillus subtilis strain JCL16]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTCCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGACTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGCGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACAGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987