Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRE60_RS08350 Genome accession   NZ_CP054153
Coordinates   1865162..1865680 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain DB-B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1860162..1870680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS08330 (HRE60_08330) - 1862074..1863018 (+) 945 WP_037611177.1 magnesium transporter CorA family protein -
  HRE60_RS08335 (HRE60_08335) - 1863088..1863759 (+) 672 WP_002884401.1 DUF1129 domain-containing protein -
  HRE60_RS08340 (HRE60_08340) - 1863876..1864757 (+) 882 WP_037611176.1 DUF4300 family protein -
  HRE60_RS08345 (HRE60_08345) rpsR 1864881..1865120 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  HRE60_RS08350 (HRE60_08350) ssb 1865162..1865680 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  HRE60_RS08355 (HRE60_08355) rpsF 1865692..1865982 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  HRE60_RS08360 (HRE60_08360) - 1866187..1867140 (+) 954 WP_181670715.1 hypothetical protein -
  HRE60_RS08365 (HRE60_08365) mutY 1868308..1869459 (+) 1152 WP_181670716.1 A/G-specific adenine glycosylase -
  HRE60_RS08370 (HRE60_08370) - 1869757..1869948 (-) 192 WP_238799481.1 hypothetical protein -
  HRE60_RS10980 - 1870035..1870436 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=451188 HRE60_RS08350 WP_002891844.1 1865162..1865680(-) (ssb) [Streptococcus salivarius strain DB-B5]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=451188 HRE60_RS08350 WP_002891844.1 1865162..1865680(-) (ssb) [Streptococcus salivarius strain DB-B5]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGCATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGGGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36