Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HRJ47_RS16190 Genome accession   NZ_CP054137
Coordinates   3316416..3316820 (-) Length   134 a.a.
NCBI ID   WP_086400252.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3311416..3321820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS16160 (HRJ47_16150) - 3311500..3311769 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HRJ47_RS16165 (HRJ47_16155) rapZ 3311766..3312617 (-) 852 WP_002117179.1 RNase adapter RapZ -
  HRJ47_RS16170 (HRJ47_16160) panC 3312641..3313489 (-) 849 WP_086400250.1 pantoate--beta-alanine ligase -
  HRJ47_RS16175 (HRJ47_16165) panB 3313493..3314302 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HRJ47_RS16180 (HRJ47_16170) folK 3314348..3314830 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HRJ47_RS16185 (HRJ47_16175) pcnB 3314827..3316290 (-) 1464 WP_086400251.1 polynucleotide adenylyltransferase PcnB -
  HRJ47_RS16190 (HRJ47_16180) comEA 3316416..3316820 (-) 405 WP_086400252.1 ComEA family DNA-binding protein Machinery gene
  HRJ47_RS16195 (HRJ47_16185) mazG 3316789..3317595 (-) 807 WP_086400253.1 nucleoside triphosphate pyrophosphohydrolase -
  HRJ47_RS16200 (HRJ47_16190) - 3317708..3318481 (+) 774 WP_019767974.1 SDR family oxidoreductase -
  HRJ47_RS16205 (HRJ47_16195) - 3319004..3320317 (+) 1314 WP_086400346.1 COG3014 family protein -
  HRJ47_RS16210 (HRJ47_16200) - 3320337..3320747 (+) 411 WP_063098121.1 YcfL family protein -
  HRJ47_RS16215 (HRJ47_16205) lpoB 3320801..3321403 (+) 603 WP_063098120.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15491.76 Da        Isoelectric Point: 10.6823

>NTDB_id=451051 HRJ47_RS16190 WP_086400252.1 3316416..3316820(-) (comEA) [Acinetobacter pittii strain JXA13]
MQFSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQRSAHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=451051 HRJ47_RS16190 WP_086400252.1 3316416..3316820(-) (comEA) [Acinetobacter pittii strain JXA13]
ATGCAGTTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCGACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCGCTCCGCTCATTCTAATAGCCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAATGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403